Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo04g2136 ATGGAGTCTAATACACTAGACAAGAATGAGAGAAACTGGGCTGACGAAGGAATACCGCCTGTCCGATTGGGTCTGCGGGAGAAGGTTCTGATCGACAACATTAAGTTGGGTAAATTTGTTCTGCAGAAATTGGTGGTATTTCCTCTCAAACTTCAGAATTTGTGGCTTTTGAACAATTATATGGGGAACTGTTTGGATAAGGATGAATCTACGGATACACATTCTGATCAACATGTGGAGTTAGCTTCTGGAAATGTGAAACTTATTAGCAGCACCGAAGCTTGGGAGCAAAAGTTGGAAGAAGCAACGAGAGATGGCAAAACTTTAATACTGAAGCTCAATGTTCAACAGGTGATCCTGAATTTCAGTGCTACTTGGTGTGGTCCTTGTAAAATGATTGCGCCGTATTACTGCGAGTTATCTGAGAAATTCACATCGATAGTGTTCTTAATAGTCGATGTGGATGAACTAAGCGACTTCGCCGCTACATGGGACATCAAAGCCACGCCAACTTTCTTCTTTTTTCAAAACGGACAACAAGTTGACAAACTTGTAGGAGCAAACAAGCCAGAGCTGCAGAAGAAGATTGCTGCCATTACCGACTCGGTTCCAAAGTGGCAGTAA 624 0.4247 MESNTLDKNERNWADEGIPPVRLGLREKVLIDNIKLGKFVLQKLVVFPLKLQNLWLLNNYMGNCLDKDESTDTHSDQHVELASGNVKLISSTEAWEQKLEEATRDGKTLILKLNVQQVILNFSATWCGPCKMIAPYYCELSEKFTSIVFLIVDVDELSDFAATWDIKATPTFFFFQNGQQVDKLVGANKPELQKKIAAITDSVPKWQ* 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo04g2136 207 ProSitePatterns Thioredoxin family active site. 119 137 IPR017937 -
Amo04g2136 207 PANTHER THIOREDOXIN H9 61 205 - -
Amo04g2136 207 SUPERFAMILY Thioredoxin-like 78 200 IPR036249 -
Amo04g2136 207 CDD TRX_family 118 197 - -
Amo04g2136 207 PRINTS Thioredoxin family signature 126 135 - -
Amo04g2136 207 PRINTS Thioredoxin family signature 118 126 - -
Amo04g2136 207 PRINTS Thioredoxin family signature 165 176 - -
Amo04g2136 207 PANTHER THIOREDOXIN 61 205 - -
Amo04g2136 207 Pfam Thioredoxin 114 197 IPR013766 -
Amo04g2136 207 Gene3D Glutaredoxin 61 205 - -
Amo04g2136 207 ProSiteProfiles Thioredoxin domain profile. 88 201 IPR013766 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo04g2136 Amo-Chr4 91458335 91461646 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo04g2136 K03671 - gmx:100813401 208.379
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo14g3068 14 129587012 129590320 Amo04g2136 04 91458335 91461646 hybridization
Amo04g2136 04 91458335 91461646 Amo12g0438 12 7150293 7154657 PCT
Amo04g2136 04 91458335 91461646 Amo02g0520 02 6413882 6418000 PCT
Amo12g0438 12 7150293 7154657 Amo04g2136 04 91458335 91461646 PCT
Amo02g0520 02 6413882 6418000 Amo04g2136 04 91458335 91461646 PCT