Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g0437 ATGTGCATTCAATACCTGGTTAATAAGCTTGCTATGGAGAATCAAAGGAGTGTTATTACCTTGATCCTTTTTCTGATCCTTACTAAAAGCGTAAGTTCAACTGAATTTGATAGCAGTGAATATGAAGAAGGGGAAAGCCATTCCATATCCTTCCAAAGCTCTAGGAGCGAAATGGGAGATGTCGAAGAAGGTGAATGGGAGATGGTGCAAACCAAGGGAAACCAATTTGTGGTGAGGGACCAACCTTTCTATGTGAATGGATTCAACACATACTGGCTGATGGTATTTGCTGCGGACGAGTCCACCAGAGGAAAGGTCAGTGAGGTGTTCAAGCATGCATCCTCAGTAGGCATGACAGCACTAGATTTTGTGGTGAGTGAAGCAAAGAAATACAGAATAAGGCTCATACTGTCATTGGTAAACAACTGGGAGGCTTATGGCGGCAAAGCGCAGTATGTCAAATGGGGAACTGCTGCCGGCCTCAACTTGACCTCCGATGACGACTTCTTCTCACATCCAACTCTCAGAAGCTACTACAAGAACCATGTTAAGACGGTGCTCAACAGAGTAAATACATACACAAACATCACCTACAAGGAAGACCCTACAATTTTCGCTTGGGAACTCATGAATGAGCCTCGATGTATCTTGGATTCCTCAGGTGATACATTACAGGAATGGATAAAAGAAATGGCATTCTATGTGAAGAGCATTGATACGAAGCACCTAGTGGAGATTGGTCTTGAAGGATTTTACGGACCCTCGACACCTCAAAGAGTTCAGTTCAACCCAAACGTATTTGCTCAACAGGTTGGAACTGATTTTATCAGGAACCACCAGGTTCTCGGTGTAGACTTTGCTTCTGTTCACATCTATCCAGACTCTTGGATTTCACAATCAATTGCTGATACCCATCTCCCATTCATAAAGTCTTGGATGGAAGCCCACATCGAGGATGCTGAAAAGTACCTTGGAATGCCCGTTGTTTTTGCCGAGTTTGGTGTATCTTCAAAAGATCCTGGTTACAATTCATCATACAGAGACAACCTCATAAACACAGTGTACAAGACCATCCTTAACTCCACAAAGAAAGGAGGTAGCGGGGCTGGAAGCCTTTTGTGGCAGCTCTTTCCTGATGGAACAGACTACATGGATGATGGATATTCAATTGTTCTCTCAAAATCTCCTTCCACCTCAAGCATCATATCCCTTCAATCCACAAGGCTTGCTCTGTTCAACTCCTTGTGTTCTAAGAGATGTCACTGGAGTTGTAAGAAGAAAAGCATGTTCCAAAAAGTACTATATCATGATGAGCTCTAA 1320 0.4318 MCIQYLVNKLAMENQRSVITLILFLILTKSVSSTEFDSSEYEEGESHSISFQSSRSEMGDVEEGEWEMVQTKGNQFVVRDQPFYVNGFNTYWLMVFAADESTRGKVSEVFKHASSVGMTALDFVVSEAKKYRIRLILSLVNNWEAYGGKAQYVKWGTAAGLNLTSDDDFFSHPTLRSYYKNHVKTVLNRVNTYTNITYKEDPTIFAWELMNEPRCILDSSGDTLQEWIKEMAFYVKSIDTKHLVEIGLEGFYGPSTPQRVQFNPNVFAQQVGTDFIRNHQVLGVDFASVHIYPDSWISQSIADTHLPFIKSWMEAHIEDAEKYLGMPVVFAEFGVSSKDPGYNSSYRDNLINTVYKTILNSTKKGGSGAGSLLWQLFPDGTDYMDDGYSIVLSKSPSTSSIISLQSTRLALFNSLCSKRCHWSCKKKSMFQKVLYHDEL* 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g0437 439 Pfam Cellulase (glycosyl hydrolase family 5) 117 354 IPR001547 GO:0004553|GO:0071704
Amo12g0437 439 Gene3D Glycosidases 66 412 - -
Amo12g0437 439 PANTHER - 18 119 IPR045053 GO:0004553
Amo12g0437 439 PANTHER - 120 439 IPR045053 GO:0004553
Amo12g0437 439 PANTHER MANNAN ENDO-1,4-BETA-MANNOSIDASE 18 119 - -
Amo12g0437 439 PANTHER MANNAN ENDO-1,4-BETA-MANNOSIDASE 120 439 - -
Amo12g0437 439 SUPERFAMILY (Trans)glycosidases 67 397 IPR017853 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g0437 Amo-Chr12 7146519 7148857 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo12g0437 16 439 Glycoside Hydrolase AT5G01930 62.555 0.0 602
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g0437 K19355 - gmx:100801139 702.975
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo12g0437 12 7146519 7148857 Amo02g0518 02 6404494 6406540 hybridization
Amo04g2129 04 91405892 91410462 Amo12g0437 12 7146519 7148857 PCT
Amo12g0437 12 7146519 7148857 Amo04g2129 04 91405892 91410462 PCT