Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo02g0518 ATGTGCATTCAATACCTGGTTAATAAGCTTGCTATGGAGAATCAAAGGAGTGTTATTACCTTGATCCTTTTTCTGATCCTTACTAAAAGCGTAAGTTCAACTGAATTTGATAGCAGTGAATATGAAGAAGGGGAAAGCCATTCCATATCCTTCCAAAGCTCTAGGAGCGAAATGGGAGATGTCGAAGAAGGTGAATGGGAGATGGTGCAAACCAAGGGAAACCAATTTGTGGTGAGGGACCAACCTTTCTATGTGAATGGATTCAACACATACTGGCTGATGGTATTTGCTGCGGACGAGTCCACCAGAGGAAAGGTCAGTGAGGTGTTCAAGCATGCATCCTCAGTAGGCATGACAGCACTAGATTTTGTGGTGAGTGAAGCAAAGAAATACAGAATAAGGCTCATACTGTCATTGGTAAACAACTGGGAGGCTTATGGCGGCAAAGCGCAGTATGTCAAATGGGGAACTGCTGCCGGCCTCAACTTGACCTCCGATGACGACTTCTTCTCACATCCAACTCTCAGAAGCTACTACAAGAACCATGTTAAGACGGTGCTCAACAGAGTAAATACATACACAAACATCACCTACAAGGAAGACCCTACAATTTTCGCTTGGGAACTCATGAATGAGCCTCGATGTATCTTGGATTCCTCAGGTGATACATTACAGGAATGGATAAAAGAAATGGCATTCTATGTGAAGAGCATTGATACAATTCAGTTCAACCCAAACGTATTTGCTCAACAGGTTGGAACTGATTTTATCAGGAACCACCAGGTTCTCGGTGTAGACTTTGCTTCTGTTCACATCTATCCAGACTCTTGGATTTCACAATCAATTGCTGATACCCATCTCCCATTCATAAAGTCTTGGATGGAAGCCCACATCGAGGATGCTGAAAAGTACCTTGGAATGCCCGTTGTTTTTGCCGAGTTTGGTGTATCTTCAAAAGATCCTGGTTACAATTCATCATACAGAGACAACCTCATAAACACAGTGTACAAGACCATCCTTAACTCCACAAAGAAGGAGCTCTTTCCTGATGGAACAGACTACATGGATGATGGATATTCAATTGTTCTCTCAAAATCTCCTTCCACCTCAAGCATCATATCCCTTCAATCCACAAGGCTTGCTCTGTTCAACTCCTTGTGTTCTAAGAGATGTCACTGGAGTTGTAAGAAGAAAAGCATGTTCCAAAAAGTACTATATCATGATGAGCTCTAA 1233 0.4242 MCIQYLVNKLAMENQRSVITLILFLILTKSVSSTEFDSSEYEEGESHSISFQSSRSEMGDVEEGEWEMVQTKGNQFVVRDQPFYVNGFNTYWLMVFAADESTRGKVSEVFKHASSVGMTALDFVVSEAKKYRIRLILSLVNNWEAYGGKAQYVKWGTAAGLNLTSDDDFFSHPTLRSYYKNHVKTVLNRVNTYTNITYKEDPTIFAWELMNEPRCILDSSGDTLQEWIKEMAFYVKSIDTIQFNPNVFAQQVGTDFIRNHQVLGVDFASVHIYPDSWISQSIADTHLPFIKSWMEAHIEDAEKYLGMPVVFAEFGVSSKDPGYNSSYRDNLINTVYKTILNSTKKELFPDGTDYMDDGYSIVLSKSPSTSSIISLQSTRLALFNSLCSKRCHWSCKKKSMFQKVLYHDEL* 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo02g0518 410 PANTHER MANNAN ENDO-1,4-BETA-MANNOSIDASE 119 410 - -
Amo02g0518 410 PANTHER - 18 119 IPR045053 GO:0004553
Amo02g0518 410 Gene3D Glycosidases 66 383 - -
Amo02g0518 410 PANTHER MANNAN ENDO-1,4-BETA-MANNOSIDASE 18 119 - -
Amo02g0518 410 PANTHER - 119 410 IPR045053 GO:0004553
Amo02g0518 410 SUPERFAMILY (Trans)glycosidases 67 363 IPR017853 -
Amo02g0518 410 Pfam Cellulase (glycosyl hydrolase family 5) 117 333 IPR001547 GO:0004553|GO:0071704
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo02g0518 Amo-Chr2 6404494 6406540 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo02g0518 16 410 Glycoside Hydrolase AT5G01930 56.828 0.0 525
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo02g0518 K19355 - gmx:100801139 623.624
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo12g0437 12 7146519 7148857 Amo02g0518 02 6404494 6406540 hybridization
Amo04g2129 04 91405892 91410462 Amo02g0518 02 6404494 6406540 PCT
Amo02g0518 02 6404494 6406540 Amo04g2129 04 91405892 91410462 PCT