Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo11g2648 ATGGAAGCAAAGACTCCTCGTGCTGCCTCAGAACCATTGAAGTATCAGACATGGTTCTTGAAGGTTTCCATACACTGTGAAGGTTGCAGAAGGAAAGTAAAGAAAGTTCTACGCAACATTGATGGTGTTTTCACTACAACAATTGATCCCCAGCAGCAGAAGGTTACAGTGACGGGAAGTGTTGGTGTTGAGACTCTCATAAGGAAACTGATCAAAGCTGGGAAGCACGCTGAGATTTGGCCGGAAAATGGCGCCGGAAAGGACGGGAAACCGAAGAAGAGGAACGAACAACAAAGAGAAGCAGAAGGCGTGGAGAACCACCATCGTTCCCCTGCAAATGCTGAATCAAACTCTGTCTCTGCCAAAAACAGGGGAATTGAAAATGCAGACAACTCAAGCAACAACAACAAGAAGACCAGCGAGTCCAAAACCGGCGGCAAAAAGTCGCCGGAGAAGTCTTCGGGAGGTGGTGCCTCACCACCAGAGCAAGAGAAGAAGGGTAAGAAGGGTGGTGGTGTTGAAGGTGAAGGTGAAGGTGAAGGTGAAGGGGATTCAGTGAAGAAGAATAAGAAGAAGAAAAAGAAGGTTCAGAGTAGTGGAATTGAAAAGAATGGGTCGAGTTCAGCATCATCAAGCGGTGCAGGTGCACACAGTGGATCAGGAGAGGGAATGGGGCAGATGAATCTGAGCCCTACACGTCAGCAAGAATGGGCATATGCGTATCCAGAATCAGAATCTTACTACTACCCAGGAGCAGGACCTTTGGTGTACCTAGCAACATATAACAGATTTTGTCCCATGGCCATGCATGGCAAAATGGGTGGTGGTCCTTCTTACTATGTTTCACCATTGCCCTACATCTCTGCAGGTCTTGACCATGACCCTTACCACTTTCAATCTCCACCGTTGGTTCCCTTTGAGATCTTCAGTGATGACAATGCTAATGCCTGTTCTCTTATGTGA 963 0.4735 MEAKTPRAASEPLKYQTWFLKVSIHCEGCRRKVKKVLRNIDGVFTTTIDPQQQKVTVTGSVGVETLIRKLIKAGKHAEIWPENGAGKDGKPKKRNEQQREAEGVENHHRSPANAESNSVSAKNRGIENADNSSNNNKKTSESKTGGKKSPEKSSGGGASPPEQEKKGKKGGGVEGEGEGEGEGDSVKKNKKKKKKVQSSGIEKNGSSSASSSGAGAHSGSGEGMGQMNLSPTRQQEWAYAYPESESYYYPGAGPLVYLATYNRFCPMAMHGKMGGGPSYYVSPLPYISAGLDHDPYHFQSPPLVPFEIFSDDNANACSLM* 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo11g2648 320 Pfam Heavy-metal-associated domain 22 76 IPR006121 GO:0046872
Amo11g2648 320 CDD HMA 20 78 IPR006121 GO:0046872
Amo11g2648 320 SUPERFAMILY HMA, heavy metal-associated domain 14 81 IPR036163 GO:0046872
Amo11g2648 320 MobiDBLite consensus disorder prediction 78 109 - -
Amo11g2648 320 MobiDBLite consensus disorder prediction 78 228 - -
Amo11g2648 320 MobiDBLite consensus disorder prediction 110 140 - -
Amo11g2648 320 MobiDBLite consensus disorder prediction 162 187 - -
Amo11g2648 320 ProSiteProfiles Heavy-metal-associated domain profile. 23 79 IPR006121 GO:0046872
Amo11g2648 320 PANTHER HEAVY METAL-ASSOCIATED ISOPRENYLATED PLANT PROTEIN 33-RELATED 9 320 - -
Amo11g2648 320 Gene3D - 14 79 - -
Amo11g2648 320 MobiDBLite consensus disorder prediction 200 228 - -
Amo11g2648 320 PANTHER HEAVY-METAL-ASSOCIATED DOMAIN PROTEIN 9 320 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo11g2648 Amo-Chr11 134554783 134556501 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo11g2648 - - mtr:MTR_4g119820 271.166
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo01g3479 01 107383615 107385379 Amo11g2648 11 134554783 134556501 hybridization
Amo11g2648 11 134554783 134556501 Amo04g0368 04 6898001 6899460 PCT
Amo04g0368 04 6898001 6899460 Amo11g2648 11 134554783 134556501 PCT