Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g3479 ATGGAAGCAAAGACTCCTCGTGCTGCCTCAGAACCATTGAAGTATCAGACATGGTTCTTGAAGGTTTCCATACACTGTGAAGGTTGCAGAAGGAAAGTAAAGAAAGTTCTACGCAACATTGATGGTGTTTTCACTACAACAATTGATCCCCARCAGCAGAAGGTTACAGTGACGGGAAGTGTTGGTGTTGAGACTCTCATAAGGAAACTGATCAAAGCTGGGAAGCACGCTGAGATTTGGCCGGAAAATGGCGCCGGAAAGGACGGGAAACCGAAGAAGAGGAACGAACAACAAAGAGATGCAGAAAGCGTGGAGAACCACCACCGTTCCCCTGCAAATGCTGAAGCAAACTCTGTCTCTGCCAAAAACAGGGGAATTGAAAATGCAGACAACTCAAGCAACAACAAGAAGAAGACCAGCGAGTCCAAAACCGGCGGCAAAAAGTCGCCGGAGAAGTCTTCGGGAGGTGGTGCCTCACCACCAGAGCAAGAGAAGAAGGGTAAGAAGGGTGGTGGTGTTGAAGGTGAAGGTGAAGGTGAAGGTGAAGGGGATTCAGTGAAGAAGAATAAGAAGAAGAAAAAGAAGGTTCAGAGTAGTGGAATTGAAAAGAATGGGTCGAGTTCAGCATCATCAAGCGGTGCAGGTGCACACAGTGGATCAGGAGAGGGARTGGGGCAGATGAATCTGAGCCCTACACGTCAGCAAGAATGGGCATATGCGTATCCAGAATCAGAATCTTACTACTACCCAGGAGCAGGACCTTTGGTGTACCTAGCAACATATAACAGATTTTGTCCCATGGCCATGCATGGCAAAATGGGTGGTGGTCCTTCTTACTATGTTTCACCATTGCCCTACATCTCTGCAGGTCTTGACCATGACCCTTACCACTTTCAATCTCCACCGTTGGTTCCTTTTGAGATCTTCAGTGATGACAATGCTAATGCCTGTTCTCTTATGTGA 963 0.4725 MEAKTPRAASEPLKYQTWFLKVSIHCEGCRRKVKKVLRNIDGVFTTTIDPQQQKVTVTGSVGVETLIRKLIKAGKHAEIWPENGAGKDGKPKKRNEQQRDAESVENHHRSPANAEANSVSAKNRGIENADNSSNNKKKTSESKTGGKKSPEKSSGGGASPPEQEKKGKKGGGVEGEGEGEGEGDSVKKNKKKKKKVQSSGIEKNGSSSASSSGAGAHSGSGEGXGQMNLSPTRQQEWAYAYPESESYYYPGAGPLVYLATYNRFCPMAMHGKMGGGPSYYVSPLPYISAGLDHDPYHFQSPPLVPFEIFSDDNANACSLM* 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g3479 320 Pfam Heavy-metal-associated domain 22 76 IPR006121 GO:0046872
Amo01g3479 320 SUPERFAMILY HMA, heavy metal-associated domain 14 81 IPR036163 GO:0046872
Amo01g3479 320 PANTHER HEAVY METAL-ASSOCIATED ISOPRENYLATED PLANT PROTEIN 33-RELATED 9 320 - -
Amo01g3479 320 MobiDBLite consensus disorder prediction 162 187 - -
Amo01g3479 320 MobiDBLite consensus disorder prediction 110 133 - -
Amo01g3479 320 MobiDBLite consensus disorder prediction 78 231 - -
Amo01g3479 320 CDD HMA 20 78 IPR006121 GO:0046872
Amo01g3479 320 MobiDBLite consensus disorder prediction 78 109 - -
Amo01g3479 320 Gene3D - 14 79 - -
Amo01g3479 320 MobiDBLite consensus disorder prediction 134 148 - -
Amo01g3479 320 MobiDBLite consensus disorder prediction 200 231 - -
Amo01g3479 320 ProSiteProfiles Heavy-metal-associated domain profile. 23 79 IPR006121 GO:0046872
Amo01g3479 320 PANTHER HEAVY-METAL-ASSOCIATED DOMAIN PROTEIN 9 320 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g3479 Amo-Chr1 107383615 107385379 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g3479 - - lja:Lj0g3v0144089.1 267.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo01g3479 01 107383615 107385379 Amo11g2648 11 134554783 134556501 hybridization
Amo01g3479 01 107383615 107385379 Amo04g0368 04 6898001 6899460 PCT
Amo04g0368 04 6898001 6899460 Amo01g3479 01 107383615 107385379 PCT