Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo11g1387 ATGGGAGAAGAGAAGGGTTGGTCTGTGAACGTGCCCCTGCTGAACGGGGGGAATGAAGAAGGGTCTCGGCAACCGAGCAGAAGGGTTGTGATTGGGGCAGTGTGCGGGTTCTTGGTGCTGATTTCGTTAGCGGCATTGATTGGATTTCACAATGCATATAGTGGGGAGCCCTTGTATTGTGCGGTTCAAGGAACAACGCATGGACGGCCGGTTCTTTCGCGAGGGGTGTCGGCCGGTGTATCGGAGAAGACCAATAGGCATTTGGGAGCAAAGCCATTCCCTGGCTGGAGCAACACCATGCTCTCGTGGCAGAGGACTGCCTTCCACTTCCAGCCCGATAAGAACTGGATGAACGATCCTAATGGTCCTGTATACTACAAGGAATGGTATCACTTCTTCTACCAGTATAATCCAAACGATGCCGTTTGGGGTGACATAGTTTGGGGCCACGCAGTGTCAAGGGACATGATCCACTGGCTTTACCTTCCAATCGCAATGGTTCCAGACCAATGGTACGATGCAAATGGTGTCTGGACCGGCTCAGCCACCATCTTATCCGATGGCCAACTCGTCATGCTCTACACCGGTTCGACCAACGAGTCGGTTCAAGTACAAAACCTGGCTTATCCGGCTGATCCTTCCGACCCTCTCCTTCTGAATTGGACCAAGTACGACAAAAACCCGGTTCTATCCCCTCCTCCGGGCATTCATTACCGCGACTTCCGCGATCCGACGACGGCCATGCTGACGTCGGAAGGCAAGTGGCGTATCAGCATTGGGTCCAAGATCAACAAAACCGGCATTGCGCTTATCTATGACACTGAGGATTTCAAAAATTTCGAGCTCAAGAATGGGTGGCTCCGGGCCGTGCAGGGAACCGGTATGTGGGAGTGCGTTGACTTTTATCCTGTGTCAAGCATCAATGATGTTGGATTGGATACCTCTGCCTATGGGGATGGTGTTAAGCATGTGGTGAAGGTGAGCTTGGATGATGATAGAAATGATTACTATGCAATTGGTTCTTATGATGAGAAGCTTGCAAGCTTCTTGCCTGATGATGTTAAGAATGATGTTGGTATTGGACTGAGGTATGACTATGGTAATTTCTATGCTTCCAAGACATTCTTTGATCCAAGTAAGCAAAGGAGAATCTTGTGGGGTTGGATTACAGAGTATGATAGCGAGTGTGTTGATAGAACCAAGGGCTGGGCATCACTTCAGGGCATTCCAAGGACAGTGAGACTTGATAGGAAGACAGGGAGCAATTTGATTCAGTGGCCTGTTGAGGAGGTGAATAGTTTAAGATTGAGAAGCAGTGAGTTTAAGGATTTGAAGGCCAAGCCTGGTTCAGTTGTTCCACTACAAGTTGAAACAGCCACACAGTTGGATATTGTTGCGGAATTTGAAGTAGACAAGGAAGCACTGGAGACAACATTACCGGAGAGCGATACAGACTACATTTGCGAAAGCAGCGGCGGAGCTTCTCGCCGTGGTGCCTTGGGACCTTTTGGTCTTCTTGTGTTAGCAGATGCTGGACTTTCTGAATTTACTCCTTTGTACTTCTATGTCACCAAAGGCCTCAATGGAAGTCTTCGCACTACTTTCTGCTCTGACCAGTCAAGGTCTTCTGTAGCAACGAATGTTAACAAGAAGGTGTTAGGTAGCGTTGTGCCAGTTTTTGGAGGTGAAAAGTTCTTTGCTCAAGGTGGAAGGACTTGTGTCACATCTCGGGTGTATCCAACAAGAGCAATCTATGGAGCTGCCAAATTATTCGTCTTCAACAATGCAACTGATGCCACTGTCACAGCATCAATCAAAGTTTGGCAGATGAACTCTGCATTTATTCGCCCATACCACCCTGAAACTGACACTTAG 1875 0.4843 MGEEKGWSVNVPLLNGGNEEGSRQPSRRVVIGAVCGFLVLISLAALIGFHNAYSGEPLYCAVQGTTHGRPVLSRGVSAGVSEKTNRHLGAKPFPGWSNTMLSWQRTAFHFQPDKNWMNDPNGPVYYKEWYHFFYQYNPNDAVWGDIVWGHAVSRDMIHWLYLPIAMVPDQWYDANGVWTGSATILSDGQLVMLYTGSTNESVQVQNLAYPADPSDPLLLNWTKYDKNPVLSPPPGIHYRDFRDPTTAMLTSEGKWRISIGSKINKTGIALIYDTEDFKNFELKNGWLRAVQGTGMWECVDFYPVSSINDVGLDTSAYGDGVKHVVKVSLDDDRNDYYAIGSYDEKLASFLPDDVKNDVGIGLRYDYGNFYASKTFFDPSKQRRILWGWITEYDSECVDRTKGWASLQGIPRTVRLDRKTGSNLIQWPVEEVNSLRLRSSEFKDLKAKPGSVVPLQVETATQLDIVAEFEVDKEALETTLPESDTDYICESSGGASRRGALGPFGLLVLADAGLSEFTPLYFYVTKGLNGSLRTTFCSDQSRSSVATNVNKKVLGSVVPVFGGEKFFAQGGRTCVTSRVYPTRAIYGAAKLFVFNNATDATVTASIKVWQMNSAFIRPYHPETDT* 625
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo11g1387 624 Gene3D Glycosyl hydrolase domain; family 43 113 438 IPR023296 -
Amo11g1387 624 SUPERFAMILY Concanavalin A-like lectins/glucanases 427 614 IPR013320 -
Amo11g1387 624 CDD GH32_Fruct1-like 115 415 - -
Amo11g1387 624 Pfam Glycosyl hydrolases family 32 C terminal 566 609 IPR013189 -
Amo11g1387 624 Pfam Glycosyl hydrolases family 32 C terminal 430 549 IPR013189 -
Amo11g1387 624 SMART glyco_32 109 570 IPR001362 GO:0004553|GO:0005975
Amo11g1387 624 Pfam Glycosyl hydrolases family 32 N-terminal domain 109 427 IPR013148 -
Amo11g1387 624 Gene3D - 439 610 - -
Amo11g1387 624 PANTHER BETA-FRUCTOFURANOSIDASE, INSOLUBLE ISOENZYME CWINV1-RELATED 64 619 - -
Amo11g1387 624 ProSitePatterns Glycosyl hydrolases family 32 active site. 109 122 IPR018053 GO:0004553|GO:0005975
Amo11g1387 624 SUPERFAMILY Arabinanase/levansucrase/invertase 102 428 IPR023296 -
Amo11g1387 624 Pfam Beta-fructofuranosidase, N-terminal domain 12 101 IPR021792 GO:0004564
Amo11g1387 624 PANTHER ACID BETA-FRUCTOFURANOSIDASE 4, VACUOLAR 64 619 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo11g1387 Amo-Chr11 49730972 49736988 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo11g1387 18 621 Glycoside Hydrolase AT1G12240 60.506 0.0 749
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo11g1387 K01193 - gmx:100788844 885.174
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo11g1387 11 49730972 49736988 Amo11g1387 11 49730972 49736988 ECH
Amo01g1799 01 45720143 45726830 Amo11g1387 11 49730972 49736988 hybridization
Amo05g1490 05 21628050 21632618 Amo11g1387 11 49730972 49736988 PCT