Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g1799 ATGGGAGAAGAGAAGGGTTGGTCTGTGAACGTGCCCYTGCTGAACGGGGGRAATGAAGAAGGGTCTCGGCAACCGAGCAGAAGGGTTGTGATTGGGGCAGTGTGCGGGTTCTTGGTRCTGATTTCGTTAGCGGCATTGATSGGATTTCACAATGCATATAGTGGGGAGMCCTTGTATTGTGCGGTTCAAGGAACAACGCATGGACRGCCRRTTCTTTCGCGAGGGGTGTCGGCCGGTGTATCGGAGAAGACCAATAGGCATTTGGGAGCAAAGCCATTCCCTGGCTGGAGCAACACCATGCTCTCGTGGCAGAGGACTGCCTTCCACTTCCAGCCCGATAAGAACTGGATGAACGGTCCTGTATACTACAAGGAATGGTATCACTTCTTCTACCAGTATAATCCAAACGATGCCGTTTGGGGTGACATAGTTTGGGGCCACGCAGTGTCAAGGGACATGATMCAYTGGCTTTACCTTCCAATCGCAATGGTTCCAGACCAATGGTACGATGCAAATGGTGTWTGGACCGGCTCAGCCACCATCTTATCCGATGGCCAACTCGTCATGCTCTACACCGGTTCGACCAACGAGTCGGTTCAAGTACAAAACCTGGCTTATCCGGCTGATCCTTCCGACCCTCTCCTTCTGAATTGGACCAAGTACGACAAAAACCCGGTTCTATCCCCTCCTCCGGGCATTCATTACCGCGACTTCCGCGATCCGACGACGGCCATGCTGACGTCGGAAGGCAAGTGGCGTATCAGCATTGGGTCCAAGATCAACAAAACCGGCATTGCGCTTATCTATGACACTGAGGATTTCAAAAATTTCGAGCTCAAGAATGGGTGGCTCCGGGCCGTGCAGGGAACCGGTATGTGGGAGTGCGTTGACTTTTATCCSGTGTCAAGCATCAATGATGTTGGATTGGATACCTCTGCCTATGGGGATGGTGTTAAGCATGTGGTGAAGGTGAGCTTGGATGATGATAGAAATGATTACTATGCAATTGGTTCTTATGATGAGAAGCTTGCAAGCTTCTTGCCTGATGATGTTAAGAATGATGTTGGTATTGGACTGAGGTATGACTATGGTAATTTCTATGCTTCCAAGACATTCTTTGATCCAAGTAAGCAAAGGAGAATCTTGTGGGGTTGGATTACAGAGTATGATAGCGAGTGTGTTGATAGAACCAAGRGCTGGGCATCACTTCAGGGCATTCCGAGGACAGTGAGACTTGATAGGAAGACAKGGAGCAATTTGATTCAGTGGCCTGTTGAGGAGGTGAATAGTTTAAGATTGAGAAGCAGTGAGTTTAAGGATTTGAAGGCCAAGCCTGGTTCAGTTGTTCCACTACAAGTTGAAACAGCCACACAGTTGGATATTGTTGCGGAATTTGAAGTAGACAAGGAAGCACTGGAGACRACATTACCGGAGAGCGATACAGACTACATTTGCGAAAGCAGCGGCGGAGCTTCTWGCCGTGGTGCCTTGGGACCTTTTGGTCTTCTTGTGTTAGCAGATGCTGGACTTTCTGAATTTACTCCTTTGTACTTCTATGTCACCAAAGGCCTCAATGGAAGTCTTCGCACTACTTTCTGCTCTGACCAGTCAAGGTCTTCTGTAGCAACGAATGTTAACAAGAAGGTGTTAGGTAGCGTTGTGCCAGTTTTTGGAGGTGAAAAGTTGTCTTTAAGAGTACTGGTGGACCATTCTATAGTTGAAAGCTTTGCTCAAGGTGGAAGGACTTGTGTWACATCTCGGGTGTATCCAACAAGAGCAATCTATGGAGCTGCCAAATTATTCGTCTTCAACAATGCAACTGATGCCACTGTCACAGCATCAATCAAAGTTTGGCAGATGAACTCYGCATTTATTCGCCCATACCACCCTGAAACTGACACTTAG 1905 0.4761 MGEEKGWSVNVPLLNGGNEEGSRQPSRRVVIGAVCGFLVLISLAALXGFHNAYSGEXLYCAVQGTTHGXPXLSRGVSAGVSEKTNRHLGAKPFPGWSNTMLSWQRTAFHFQPDKNWMNGPVYYKEWYHFFYQYNPNDAVWGDIVWGHAVSRDMIHWLYLPIAMVPDQWYDANGVWTGSATILSDGQLVMLYTGSTNESVQVQNLAYPADPSDPLLLNWTKYDKNPVLSPPPGIHYRDFRDPTTAMLTSEGKWRISIGSKINKTGIALIYDTEDFKNFELKNGWLRAVQGTGMWECVDFYPVSSINDVGLDTSAYGDGVKHVVKVSLDDDRNDYYAIGSYDEKLASFLPDDVKNDVGIGLRYDYGNFYASKTFFDPSKQRRILWGWITEYDSECVDRTKXWASLQGIPRTVRLDRKTXSNLIQWPVEEVNSLRLRSSEFKDLKAKPGSVVPLQVETATQLDIVAEFEVDKEALETTLPESDTDYICESSGGASXRGALGPFGLLVLADAGLSEFTPLYFYVTKGLNGSLRTTFCSDQSRSSVATNVNKKVLGSVVPVFGGEKLSLRVLVDHSIVESFAQGGRTCVTSRVYPTRAIYGAAKLFVFNNATDATVTASIKVWQMNSAFIRPYHPETDT* 635
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g1799 634 Gene3D - 436 620 - -
Amo01g1799 634 PANTHER BETA-FRUCTOFURANOSIDASE, INSOLUBLE ISOENZYME CWINV1-RELATED 64 629 - -
Amo01g1799 634 SUPERFAMILY Concanavalin A-like lectins/glucanases 424 624 IPR013320 -
Amo01g1799 634 PANTHER ACID BETA-FRUCTOFURANOSIDASE 4, VACUOLAR 64 629 - -
Amo01g1799 634 Pfam Glycosyl hydrolases family 32 C terminal 427 619 IPR013189 -
Amo01g1799 634 SUPERFAMILY Arabinanase/levansucrase/invertase 102 425 IPR023296 -
Amo01g1799 634 Pfam Beta-fructofuranosidase, N-terminal domain 12 101 IPR021792 GO:0004564
Amo01g1799 634 Gene3D Glycosyl hydrolase domain; family 43 113 435 IPR023296 -
Amo01g1799 634 CDD GH32_Fruct1-like 115 412 - -
Amo01g1799 634 Pfam Glycosyl hydrolases family 32 N-terminal domain 109 424 IPR013148 -
Amo01g1799 634 SMART glyco_32 109 580 IPR001362 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g1799 Amo-Chr1 45720143 45726830 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g1799 18 631 Glycoside Hydrolase AT1G12240 61.137 0.0 760
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g1799 K01193 - gmx:100788844 897.501
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo01g1799 01 45720143 45726830 Amo11g1387 11 49730972 49736988 hybridization
Amo05g1490 05 21628050 21632618 Amo01g1799 01 45720143 45726830 PCT