Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g1490 ATGGGAACTTCTACTAATAATAACGACTCTTCTAATGATATTCCATGTTCTTACATACCCGTGCCGGATAGCCTCGATGCGGCTGAGGCTATGGCGGAACCGCGGAGACAGGTGAAGGGGTTGCTTGTGATTTTTTGTGTGCTTTTAGTACTTTTTTCGTTGGTGGCCTTCAATGGGTCTTATAGGGGATCCAATAATGCCCATGAACAAGCGTCATTGGCAACAGCATTAACAAGCATTGTTGATGAAAAATCTACATCATCAGAAACAGTACCTTCTTCTTTAACATGGCAGCAAGCAGTGTCTCGCGGTGTGTCTGCTGGTGTGTCAGAGAAGTCCAACAGGCTATTCAGCAGCAACAATGGTGAAATGTATCCGTGGAACAATAGCATGTTATCGTGGCAGAGAACAGCTTTTCATTTTCAGCCTGAGAAGAATTGGATGAACGATCCTAATGGTCCACTATACTACAAGGGATGGTATCACTTCTTCTACCAGTACAATCCAAACGCAGCTGTATGGGGAGACATAGTTTGGGGACACGCCATCTCAAGGGACTTGATTCACTGGCAACACCTTCCACTTGCTATGGTTGCTGACCAATGGTACGACAAGAACGGCGTTTGGACCGGCTCCGCCACCATCTTACCCAACGGCAAAATCATCATGTTGTACACTGGTTCCACCAACGAGTCAGTGCAGGTTCAAAACCTTGCATACCCTGCTGATCCATCTGATCCCCTCCTCATCGATTGGGTCAAGTACCCTTCCAACCCTGTCTTGTTCCCTCCACCTGGCATTGGTGCAACTGACTTTCGTGACCCAACCACCGCTTGGCTTACCTCCGAAGGCAAGTGGCGTATCACCATTGGATCCAAGCTTAACAAAACTGGCATTGCTTTGGTTTATGACACCCTGGACTTCAAGACCTACGAGCAGATAGAGGGCTTCCTTCGTGCTGTTCCTACAACCGGCATGTGGGAGTGTGTTGACTTTTTCCCTGTTTCCAAGGAGGTTGAGAATGGCTTGAACACTTCTGTTAATGGGGCGGGTGTGAAGCATGTCATGAAGGTTAGTTTGGATGATGACAGGCATGATTACTATTCAATTGGCAGCTATGATGAGAAGAATGTCAAGTTCATACCAGATGATGTTGACAACGATGTTGGTGTTGGATTGAGGTATGATTATGGTGTGTTCTATGCGTCCAAAACTTTCTTTGATGATAGCAAGAGAAGGAGAGTGTTGTGGGGTTGGATTGGAGAGTCTGATGCTGAATATGCTGATGTTGCCAAAGGCTGGGCTTCACTTCAGGGTATTCCGAGAACAGTGACACTTGATACGAAAACAGGTAGCAACTTAATTCAATGGCCTGTTGAAGAGGTGGAGAGCTTGAGACTGAGAAGCGATGAGTTTAAGGATTTGAAGGCAAAGCCAGGATCCGTGGTCCCAATAGATGTTGGGACAGCTACACAGCTTGATATTGTAGCTGAATTTGAGATTGAAAAGGAAGAGTTGGAGAAGGCAACAAGCGAGTCTAATGTGGACTACTACAGTTGCGAGAGCAGCGGTGGAGCAGCACATCGTGGTGCCTTGGGACCTTTTGGTCTTTTGGTTCTTGCAGATGATGGGCTTTCCGAGTACACTCCTGTGTACTTCTATGTGATTAAAGGAAGTGATGGAAATCTCAAGACTTCATTCTGCTCCGATCAGTCAAGGTCGTCTGTGGCAAGCGATGTAGTAAAGAAAACATTTGGAAGCTTGGTTCCAGTACTTGAAGGTGAGAAGTTTTCTGTGAGGATATTGGTGGACCATTCAATAGTGGAAAGCTTTGCGCAAGGTGGAAGGACCACGGTGACATCAAGGGTGTACCCAACAAGGGCAATCTATGGAGCTGCTAGGTTGTTCTTCTTCAATAATGCAACTGCTGCTTCTGTTACTGCTTCACTCAAAGTTTGGCAGATGAATTCTGCATTCATAAGACCTTACAACCCTGACCAGACCAACTAA 2010 0.4617 MGTSTNNNDSSNDIPCSYIPVPDSLDAAEAMAEPRRQVKGLLVIFCVLLVLFSLVAFNGSYRGSNNAHEQASLATALTSIVDEKSTSSETVPSSLTWQQAVSRGVSAGVSEKSNRLFSSNNGEMYPWNNSMLSWQRTAFHFQPEKNWMNDPNGPLYYKGWYHFFYQYNPNAAVWGDIVWGHAISRDLIHWQHLPLAMVADQWYDKNGVWTGSATILPNGKIIMLYTGSTNESVQVQNLAYPADPSDPLLIDWVKYPSNPVLFPPPGIGATDFRDPTTAWLTSEGKWRITIGSKLNKTGIALVYDTLDFKTYEQIEGFLRAVPTTGMWECVDFFPVSKEVENGLNTSVNGAGVKHVMKVSLDDDRHDYYSIGSYDEKNVKFIPDDVDNDVGVGLRYDYGVFYASKTFFDDSKRRRVLWGWIGESDAEYADVAKGWASLQGIPRTVTLDTKTGSNLIQWPVEEVESLRLRSDEFKDLKAKPGSVVPIDVGTATQLDIVAEFEIEKEELEKATSESNVDYYSCESSGGAAHRGALGPFGLLVLADDGLSEYTPVYFYVIKGSDGNLKTSFCSDQSRSSVASDVVKKTFGSLVPVLEGEKFSVRILVDHSIVESFAQGGRTTVTSRVYPTRAIYGAARLFFFNNATAASVTASLKVWQMNSAFIRPYNPDQTN* 670
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g1490 669 ProSitePatterns Glycosyl hydrolases family 32 active site. 140 153 IPR018053 GO:0004553|GO:0005975
Amo05g1490 669 Gene3D - 470 655 - -
Amo05g1490 669 PANTHER BETA-FRUCTOFURANOSIDASE, INSOLUBLE ISOENZYME CWINV1-RELATED 29 664 - -
Amo05g1490 669 Pfam Glycosyl hydrolases family 32 C terminal 461 654 IPR013189 -
Amo05g1490 669 PANTHER ACID BETA-FRUCTOFURANOSIDASE 4, VACUOLAR 29 664 - -
Amo05g1490 669 Pfam Beta-fructofuranosidase, N-terminal domain 17 132 IPR021792 GO:0004564
Amo05g1490 669 SMART glyco_32 140 615 IPR001362 GO:0004553|GO:0005975
Amo05g1490 669 CDD GH32_Fruct1-like 146 446 - -
Amo05g1490 669 Pfam Glycosyl hydrolases family 32 N-terminal domain 140 458 IPR013148 -
Amo05g1490 669 SUPERFAMILY Arabinanase/levansucrase/invertase 133 459 IPR023296 -
Amo05g1490 669 SUPERFAMILY Concanavalin A-like lectins/glucanases 458 659 IPR013320 -
Amo05g1490 669 Gene3D Glycosyl hydrolase domain; family 43 144 469 IPR023296 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g1490 Amo-Chr5 21628050 21632618 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g1490 16 664 Glycoside Hydrolase AT1G12240 64.902 0.0 862
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g1490 K01193 - gmx:100798772 1044.26
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo05g1490 05 21628050 21632618 Amo01g1799 01 45720143 45726830 PCT
Amo05g1490 05 21628050 21632618 Amo11g1387 11 49730972 49736988 PCT