Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo11g1148 ATGTATAGAGAGCGAGGGCTAGTTGGGGCCTCCAAATCGGAGGATCGGAAGCGAATCAACGACGTCCTCGATAAGCAGCTGGAGCGATCCTCACCGTCCACTTCGAGGGTTGGTGGCATCAATGGCGGCAGCAAAGACAGGTCTTCCCTTCTATCATCCTCCTCCAAGGACCCTCGCTCTACATCTATCTCCAAGAACTCAAACATCTCAGAGGAACCTGAAACAGACAGTGAAGAATCAGATGTTAGTGGCTCTGATGGAGATGACACCTCTTGGATCTCATGGTTCTGCAATCTCAGAGGAAATGAATTCTTTTGTGAGGTTGACGATGATTACATCCAAGATGACTTCAACCTGTGTGGGTTAAGCAGTCAAGTGCCTTACTATGATTATGCTCTTGATTTAATATTGGATGTTGAGTCCTCCCATGGTGACATGTTCACAGAGGAACAAAATGAGTTGATTGAATCAGCAGCGGAGATGCTTTATGGTCTGATTCATGCTCGATACGTATTGACAAGCAAAGGAATGGCTGCCATGCTTGACAAGTACAAGAACTATGATTTTGGAAGATGCCCAAGAGTTTACTGCTCTGGACAACCTTGCCTTCCAGTTGGTCAGTCAGATATTCCTAGGTCAAGTACTGTGAAGATATACTGCCCTAGATGTGAAGACCTATATTATCCTCGGTCCAAGTATCAAGGCAACATTGATGGAGCATACTTTGGGACAACATTTCCACACCTCTTCCTCATGACGTATGGACAACTGAAGCCACAAAAACCATCACAGAGCTACGTTCCAAGAGTTTTTGGGTTCAAACTTCACAAGCCATGA 837 0.454 MYRERGLVGASKSEDRKRINDVLDKQLERSSPSTSRVGGINGGSKDRSSLLSSSSKDPRSTSISKNSNISEEPETDSEESDVSGSDGDDTSWISWFCNLRGNEFFCEVDDDYIQDDFNLCGLSSQVPYYDYALDLILDVESSHGDMFTEEQNELIESAAEMLYGLIHARYVLTSKGMAAMLDKYKNYDFGRCPRVYCSGQPCLPVGQSDIPRSSTVKIYCPRCEDLYYPRSKYQGNIDGAYFGTTFPHLFLMTYGQLKPQKPSQSYVPRVFGFKLHKP* 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo11g1148 278 PANTHER CASEIN KINASE II SUBUNIT BETA 1 277 IPR000704 GO:0005956|GO:0019887
Amo11g1148 278 Gene3D protein kinase ck2 holoenzyme, chain C, domain 1 84 188 IPR016149 GO:0005956|GO:0019887
Amo11g1148 278 MobiDBLite consensus disorder prediction 1 25 - -
Amo11g1148 278 Pfam Casein kinase II regulatory subunit 91 274 IPR000704 GO:0005956|GO:0019887
Amo11g1148 278 SMART CK_II_beta_2 91 274 IPR000704 GO:0005956|GO:0019887
Amo11g1148 278 MobiDBLite consensus disorder prediction 26 70 - -
Amo11g1148 278 SUPERFAMILY Casein kinase II beta subunit 89 277 IPR035991 GO:0005956|GO:0019887
Amo11g1148 278 Gene3D - 189 263 - -
Amo11g1148 278 ProSitePatterns Casein kinase II regulatory subunit signature. 192 223 IPR000704 GO:0005956|GO:0019887
Amo11g1148 278 MobiDBLite consensus disorder prediction 1 86 - -
Amo11g1148 278 PANTHER CASEIN KINASE II SUBUNIT BETA-2 1 277 - -
Amo11g1148 278 PRINTS Casein kinase II regulatory subunit family signature 91 107 IPR000704 GO:0005956|GO:0019887
Amo11g1148 278 PRINTS Casein kinase II regulatory subunit family signature 108 122 IPR000704 GO:0005956|GO:0019887
Amo11g1148 278 PRINTS Casein kinase II regulatory subunit family signature 163 184 IPR000704 GO:0005956|GO:0019887
Amo11g1148 278 PRINTS Casein kinase II regulatory subunit family signature 188 209 IPR000704 GO:0005956|GO:0019887
Amo11g1148 278 PRINTS Casein kinase II regulatory subunit family signature 210 231 IPR000704 GO:0005956|GO:0019887
Amo11g1148 278 PRINTS Casein kinase II regulatory subunit family signature 238 255 IPR000704 GO:0005956|GO:0019887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo11g1148 Amo-Chr11 36755441 36759444 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo11g1148 K03115 - gmx:100799304 489.189
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo01g1577 01 33749465 33753912 Amo11g1148 11 36755441 36759444 hybridization
Amo05g0432 05 4976024 4982536 Amo11g1148 11 36755441 36759444 PCT