Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g0432 ATGATTCGAGTGGCGGACGGTGCGGGCGTTGATCGCAGGAAGCGAATCAACGACGTTCTCGACAAGCACTTGCACCGATCCTCACCCTCCACTTCAACCTCCGCCTCTACTAGGCCTATCAAGGCCCAAATCCAGGCCCAAATCCAAGCCAACAACTCCGACGCCACACTCGAGGAATCGGAAACCGACACCGGGGGATCGGACGTTAGCGCCTCCGACGACGGGGAAGACACCTCGTGGATCGCGTGGTTCTGCAGCCTCAGAGGGAACGAGTTCTTTTGCGAGGTCGATGATGATTACATTCAGGACGATTTTAACCTTTGTGGTTTGAGCAGCCAAGTTCCTTATTACGATTATGCCCTTGACTTGATTCTTGACGTTGACTCCTCCCACGGAGACATCTTTACAGAAGAACAAAATGAGTTGATTGAATCCGCCGCGGAGATGCTTTATGGTCTCATTCATGCCCGCTACATTTTAACAGGCAGAGGAATGGCTGCCATGCTGGACAAGTACAAGAATTATGACTTTGGTAGGTGTCCAAGAGTTTACTGCTCAGGGCAACCGTGCCTTCCGGTGGGTCAGTCCGACATCCCTAGGTCGAGCACTGTAAAGATATATTGCCCCAGGCATGAAATTAGCACCAATGCAATGCACCAATATCTCAATGTGCTGTTTGATATTATGCTTCCTATATACAAAGATACTTGCCACAAAAGCCATCACAGAGCTATGTTCCAAGAGTTTTTGGTTTTAAAGTTCACAAGCCATGATGAAGAATTGAAGATGGATGAAATTTCAAAGCTTGCAAACAAAAAAAAGAACAAGGTAATAAGGACATGGAGAACTGAAAGATGGATATGCTGTGTTGATCGGAAGCGAATCAACGACGTCCTCGACAAGCAGCTGGAGCGATCGTCGCCGTCAACGTCGACGTCGAGGCCAATCAACGGCAAGGACAGGCCCTCCTCTCTCTTATCCGGCAAGTCCTCCTCCGCACGCGATCACGCCCTCAGGGACTCTCGCTCCACCGCCTCCGCCACTATCTCCAAGAACTCTAACGCTTCCGATGAGGAATCTGAGACTGACAGCGAGGAATCTGATGTTAGTGGTTCTGATGGAGATGACACGTCGTGGATCTCGTGGTTCTGCAATTTGAGAGGGAACGAGTTCTTCTGCGAGGTGGATGATGATTACATCCAGGATGACTTCAACCTTTGTGGATTGAGCAGTCAAGTGCCTTACTATGATTACGCTCTTGATTTGATTTTGGATGTTGAATCCTCTCATGGTGACATGTTTACAGAGGAACAAAATGAATTAATTGAATCAGCAGCAGAGATGCTATATGGTCTGATTCATGCCAGGTATATCTTGACAGGCAAAGGATTGGCCTCCATGCTGGACAAGTACAAGAACTATGATTTTGGTAGATGTCCAAGAGTGTACTGCTCTGGGCAGCCCTGCCTTCCGGTTGGTCAGTCAGATGTTCCAAGGTCCAGTACCGTGAAAATATACTGCCCAAGGTGTGAAGACATTTATTATCCGCGGTCCAAGTATCAAGGCAACATTGATGGAGCTTATTTTGGAACTACATTTCCTCACCTCTTCCTGATGACTTACGGACAACTGAAGCCACAGAAACCATCACAGAGCTATGTTCCAAGAGTCTTTGGCTTCAAGCTTCACAAGCCATGA 1698 0.48 MIRVADGAGVDRRKRINDVLDKHLHRSSPSTSTSASTRPIKAQIQAQIQANNSDATLEESETDTGGSDVSASDDGEDTSWIAWFCSLRGNEFFCEVDDDYIQDDFNLCGLSSQVPYYDYALDLILDVDSSHGDIFTEEQNELIESAAEMLYGLIHARYILTGRGMAAMLDKYKNYDFGRCPRVYCSGQPCLPVGQSDIPRSSTVKIYCPRHEISTNAMHQYLNVLFDIMLPIYKDTCHKSHHRAMFQEFLVLKFTSHDEELKMDEISKLANKKKNKVIRTWRTERWICCVDRKRINDVLDKQLERSSPSTSTSRPINGKDRPSSLLSGKSSSARDHALRDSRSTASATISKNSNASDEESETDSEESDVSGSDGDDTSWISWFCNLRGNEFFCEVDDDYIQDDFNLCGLSSQVPYYDYALDLILDVESSHGDMFTEEQNELIESAAEMLYGLIHARYILTGKGLASMLDKYKNYDFGRCPRVYCSGQPCLPVGQSDVPRSSTVKIYCPRCEDIYYPRSKYQGNIDGAYFGTTFPHLFLMTYGQLKPQKPSQSYVPRVFGFKLHKP* 566
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g0432 565 PRINTS Casein kinase II regulatory subunit family signature 525 542 IPR000704 GO:0005956|GO:0019887
Amo05g0432 565 PRINTS Casein kinase II regulatory subunit family signature 378 394 IPR000704 GO:0005956|GO:0019887
Amo05g0432 565 PRINTS Casein kinase II regulatory subunit family signature 497 518 IPR000704 GO:0005956|GO:0019887
Amo05g0432 565 PRINTS Casein kinase II regulatory subunit family signature 450 471 IPR000704 GO:0005956|GO:0019887
Amo05g0432 565 PRINTS Casein kinase II regulatory subunit family signature 395 409 IPR000704 GO:0005956|GO:0019887
Amo05g0432 565 PRINTS Casein kinase II regulatory subunit family signature 475 496 IPR000704 GO:0005956|GO:0019887
Amo05g0432 565 PANTHER CASEIN KINASE II SUBUNIT BETA 285 564 IPR000704 GO:0005956|GO:0019887
Amo05g0432 565 PANTHER CASEIN KINASE II SUBUNIT BETA-2 285 564 - -
Amo05g0432 565 MobiDBLite consensus disorder prediction 302 331 - -
Amo05g0432 565 ProSitePatterns Casein kinase II regulatory subunit signature. 479 510 IPR000704 GO:0005956|GO:0019887
Amo05g0432 565 Gene3D - 177 221 - -
Amo05g0432 565 Gene3D - 476 550 - -
Amo05g0432 565 Pfam Casein kinase II regulatory subunit 79 210 IPR000704 GO:0005956|GO:0019887
Amo05g0432 565 Pfam Casein kinase II regulatory subunit 378 561 IPR000704 GO:0005956|GO:0019887
Amo05g0432 565 SMART CK_II_beta_2 378 561 IPR000704 GO:0005956|GO:0019887
Amo05g0432 565 SMART CK_II_beta_2 79 243 IPR000704 GO:0005956|GO:0019887
Amo05g0432 565 Gene3D protein kinase ck2 holoenzyme, chain C, domain 1 72 176 IPR016149 GO:0005956|GO:0019887
Amo05g0432 565 Gene3D protein kinase ck2 holoenzyme, chain C, domain 1 371 475 IPR016149 GO:0005956|GO:0019887
Amo05g0432 565 PANTHER CASEIN KINASE II SUBUNIT BETA 10 224 IPR000704 GO:0005956|GO:0019887
Amo05g0432 565 MobiDBLite consensus disorder prediction 301 374 - -
Amo05g0432 565 SUPERFAMILY Casein kinase II beta subunit 77 210 IPR035991 GO:0005956|GO:0019887
Amo05g0432 565 PANTHER CASEIN KINASE II SUBUNIT BETA-2 10 224 - -
Amo05g0432 565 SUPERFAMILY Casein kinase II beta subunit 376 564 IPR035991 GO:0005956|GO:0019887
Amo05g0432 565 MobiDBLite consensus disorder prediction 47 74 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g0432 Amo-Chr5 4976024 4982536 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g0432 K03115 - gmx:100799304 471.855
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo05g0432 05 4976024 4982536 Amo01g1577 01 33749465 33753912 PCT
Amo05g0432 05 4976024 4982536 Amo11g1148 11 36755441 36759444 PCT
Amo11g1167 11 38188724 38193191 Amo05g0432 05 4976024 4982536 PCT