Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g1577 ATGTACAAAGAGAGAGAGAAAGGTGGTGGTGTTGGGTCGAAGACTAGTGCTACAACGACGGAGGTTGATCGAAAGAGAATCAACGATGCTCTCGATAAGCACCTACACCAACACCGTTCATCTGCTTCCACTTCCCTAAACCATCACACGCATAAGACCTCCAACAATTCCACTTCTCACCATCGTAATGAGGAATCTGAAACTGATAGCGAAGAATCAGATGTTAGTGGTTCTGAAGGGGATGACACTTCTTGGATTTCATGGTTTTGCAATTTGAGAGGAAATGAATTTTTTTGTGAAGTTGATGATGATTACATACAAGATGATTTCAACCTCTGTGGATTAAGCAGTCAAGTTCCTTACTATGATTATGCGCTTGATTTAATTTTGGATGTTGAATCCTCCCATGAAGACATGTTGACGGAAGAACAAAATGAATTAATTGAATCTGCTGCTGAGATGCTTTATGGTTTGATTCATGCCCGGTACATTTTGACAAGCAAGGGGTTGGCTACAATGCTAGATAAGTACAAGAGCTTCGACTTTGGCAGATGTCCAAGAGTTTACTGCTGTGGGCAATCTTGTCTTCCGGTTGGTCAATCAGACATTCCTAGGGCAAGCACTGTCAAAATATATTGCCCCAAGTGTGAAGACATTTACTACCCGCGCTCCAAGTATCAAGATATGGATGGCGCGTATTTTGGAACTACATTTCCTCACCTCTTCTTGATGACTTACTCAAATCTGAAGCCGCAAAAGCCGTTGCAGTCACAGAGTTACGTTCCTAGAGTTTTTGGTTTCAAAGTTCACAAGCCCTGA 819 0.4212 MYKEREKGGGVGSKTSATTTEVDRKRINDALDKHLHQHRSSASTSLNHHTHKTSNNSTSHHRNEESETDSEESDVSGSEGDDTSWISWFCNLRGNEFFCEVDDDYIQDDFNLCGLSSQVPYYDYALDLILDVESSHEDMLTEEQNELIESAAEMLYGLIHARYILTSKGLATMLDKYKSFDFGRCPRVYCCGQSCLPVGQSDIPRASTVKIYCPKCEDIYYPRSKYQDMDGAYFGTTFPHLFLMTYSNLKPQKPLQSQSYVPRVFGFKVHKP* 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g1577 272 PANTHER CASEIN KINASE II SUBUNIT BETA-2 1 271 - -
Amo01g1577 272 Pfam Casein kinase II regulatory subunit 84 268 IPR000704 GO:0005956|GO:0019887
Amo01g1577 272 Gene3D - 182 255 - -
Amo01g1577 272 ProSitePatterns Casein kinase II regulatory subunit signature. 185 216 IPR000704 GO:0005956|GO:0019887
Amo01g1577 272 MobiDBLite consensus disorder prediction 19 39 - -
Amo01g1577 272 PANTHER CASEIN KINASE II SUBUNIT BETA 1 271 IPR000704 GO:0005956|GO:0019887
Amo01g1577 272 SMART CK_II_beta_2 84 268 IPR000704 GO:0005956|GO:0019887
Amo01g1577 272 MobiDBLite consensus disorder prediction 1 80 - -
Amo01g1577 272 Gene3D protein kinase ck2 holoenzyme, chain C, domain 1 77 181 IPR016149 GO:0005956|GO:0019887
Amo01g1577 272 PRINTS Casein kinase II regulatory subunit family signature 84 100 IPR000704 GO:0005956|GO:0019887
Amo01g1577 272 PRINTS Casein kinase II regulatory subunit family signature 101 115 IPR000704 GO:0005956|GO:0019887
Amo01g1577 272 PRINTS Casein kinase II regulatory subunit family signature 156 177 IPR000704 GO:0005956|GO:0019887
Amo01g1577 272 PRINTS Casein kinase II regulatory subunit family signature 181 202 IPR000704 GO:0005956|GO:0019887
Amo01g1577 272 PRINTS Casein kinase II regulatory subunit family signature 203 224 IPR000704 GO:0005956|GO:0019887
Amo01g1577 272 PRINTS Casein kinase II regulatory subunit family signature 230 247 IPR000704 GO:0005956|GO:0019887
Amo01g1577 272 SUPERFAMILY Casein kinase II beta subunit 82 271 IPR035991 GO:0005956|GO:0019887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g1577 Amo-Chr1 33749465 33753912 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g1577 K03115 - fve:101304386 419.468
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo01g1577 01 33749465 33753912 Amo11g1148 11 36755441 36759444 hybridization
Amo05g0432 05 4976024 4982536 Amo01g1577 01 33749465 33753912 PCT