Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo11g1110 ATGCTCTATTTGGCATGGCTACAATTGGTATTGATTTTCTATCAAAAACTATGTATCTTGAAGATCGAACCATTCGGCTGCAGTTGTGGTAAGGATACTGCTGGACAAGAACGATTCAGAAGTCTTATTCCAAGCTACATTAGAGATTCATCTGTTGCTGTCATCGTCTATGATGTTGCAAGCCGTCAGACGTTCCTAAACACAGTAAAGTGGATCGAGGAGGTGCGCAGTGAAAGAGGCAATGATGTTATTCTTGTTCTTGTTGGCAACAAAACTGACCTTTTGGACAAGAGGCAGGTCTCTACAGAGGATGGGGAAGAAAAGGCACGTGAGCTAAATGTTATGTTTATTGAAGCTAGTGCAAAAGCTGGTTTTAACATAAAGGCTCTCTTTCGTAAAATTGCTGCTGCGTTACCCGGAATGGAAACATTATCTTCCTCGAAACAAGATGATATGGTCGATGTCAACCTTAAAACTTCTGGTGGCAATGATTCTCAAGCTGAGGGTGGTTGTTGTTGA 519 0.4162 MLYLAWLQLVLIFYQKLCILKIEPFGCSCGKDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQTFLNTVKWIEEVRSERGNDVILVLVGNKTDLLDKRQVSTEDGEEKARELNVMFIEASAKAGFNIKALFRKIAAALPGMETLSSSKQDDMVDVNLKTSGGNDSQAEGGCC* 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo11g1110 172 TIGRFAM small_GTP: small GTP-binding protein domain 32 134 IPR005225 GO:0005525
Amo11g1110 172 ProSiteProfiles small GTPase Ras family profile. 1 172 IPR001806 GO:0003924|GO:0005525
Amo11g1110 172 Gene3D - 10 168 IPR027417 -
Amo11g1110 172 SMART ras_sub_4 4 141 - -
Amo11g1110 172 Pfam Ras family 32 137 IPR001806 GO:0003924|GO:0005525
Amo11g1110 172 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 32 143 IPR027417 -
Amo11g1110 172 ProSiteProfiles small GTPase Rab1 family profile. 1 172 - -
Amo11g1110 172 PANTHER DRAB5-RELATED 31 171 - -
Amo11g1110 172 SMART rab_sub_5 7 141 - -
Amo11g1110 172 PANTHER SMALL GTPASE SUPERFAMILY, P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASE-RELATED 31 171 - -
Amo11g1110 172 PRINTS Transforming protein P21 ras signature 19 41 - -
Amo11g1110 172 PRINTS Transforming protein P21 ras signature 81 94 - -
Amo11g1110 172 PRINTS Transforming protein P21 ras signature 116 138 - -
Amo11g1110 172 SMART rho_sub_3 9 140 IPR001806 GO:0003924|GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo11g1110 Amo-Chr11 34080529 34084873 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo11g1110 K07893 - gmx:100527651 243.047
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo11g1110 11 34080529 34084873 Amo11g1110 11 34080529 34084873 ECH
Amo01g1550 01 32586148 32590499 Amo11g1110 11 34080529 34084873 hybridization
Amo05g0449 05 5282670 5289676 Amo11g1110 11 34080529 34084873 PCT
Amo11g1110 11 34080529 34084873 Amo05g0449 05 5282670 5289676 PCT