Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g1550 ATGGCGGGATTGTCAGTGTCCGCTCTTGCGAAATACAAGCTTGTGTTCTTAGGTGATCAGTCCGTTGGAAAAACCAGCATCATTACCCGATTCATGTACGACAAATTCGACAACACCTACCAGGCTACAATTGGTATTGATTTTCTATCAAAAACTATGTATCTTGAAGATCGAACCATTCGGCTGCAGTTGTGGGATACTGCTGGACAAGAACGATTCAGAAGTCTTATTCCAAGCTACATTAGAGATTCATCTGTTGCTGTCATCGTCTATGATGTTGCAAGCCGTCAGACGTTCCTAAACACAGTAAAGTGGATCGAGGAGGTGCGCAGTGAAAGAGGCAATGATGTTATTCTTGTTCTTGTTGGCAACAAAACTGACCTTTTGGACAAGAGGCAGGTCTCTACAGAGGACGGGGAAGAAAAGGCACGTGAGCTAAATGTTATGTTTATTGAAGCTAGTGCAAAAGCTGGTTTTAACATAAAGGCTCTCTTTCGTAAAATTGCTGCTGCGTTACCCGGAATGGAAACATTATCTTCCTCGAAACAAGATGATATGGTCGATGTCAACCTTAAAACTTCTGGTGGTAATGATTCTCAAGCTGAGGGTGGTTGTTGTTGA 621 0.4267 MAGLSVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQTFLNTVKWIEEVRSERGNDVILVLVGNKTDLLDKRQVSTEDGEEKARELNVMFIEASAKAGFNIKALFRKIAAALPGMETLSSSKQDDMVDVNLKTSGGNDSQAEGGCC* 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g1550 206 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 11 177 IPR027417 -
Amo01g1550 206 PANTHER GTP-BINDING PROTEIN RAB6 5 205 - -
Amo01g1550 206 SMART rab_sub_5 12 175 - -
Amo01g1550 206 SMART ras_sub_4 9 175 - -
Amo01g1550 206 ProSiteProfiles small GTPase Rab1 family profile. 5 206 - -
Amo01g1550 206 Gene3D - 8 206 IPR027417 -
Amo01g1550 206 ProSiteProfiles small GTPase Rho family profile. 5 178 - -
Amo01g1550 206 Pfam Ras family 13 171 IPR001806 GO:0003924|GO:0005525
Amo01g1550 206 PANTHER DRAB5-RELATED 5 205 - -
Amo01g1550 206 CDD Rab6 12 172 - -
Amo01g1550 206 ProSiteProfiles small GTPase Ras family profile. 7 206 IPR001806 GO:0003924|GO:0005525
Amo01g1550 206 SMART rho_sub_3 14 174 IPR001806 GO:0003924|GO:0005525
Amo01g1550 206 PRINTS Transforming protein P21 ras signature 115 128 - -
Amo01g1550 206 PRINTS Transforming protein P21 ras signature 12 33 - -
Amo01g1550 206 PRINTS Transforming protein P21 ras signature 53 75 - -
Amo01g1550 206 PRINTS Transforming protein P21 ras signature 35 51 - -
Amo01g1550 206 PRINTS Transforming protein P21 ras signature 150 172 - -
Amo01g1550 206 TIGRFAM small_GTP: small GTP-binding protein domain 11 168 IPR005225 GO:0005525
Amo01g1550 206 SMART ran_sub_2 17 202 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g1550 Amo-Chr1 32586148 32590499 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g1550 K07893 - gmx:100790511 360.147
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo01g1550 01 32586148 32590499 Amo11g1110 11 34080529 34084873 hybridization
Amo05g0449 05 5282670 5289676 Amo01g1550 01 32586148 32590499 PCT
Amo01g1550 01 32586148 32590499 Amo05g0449 05 5282670 5289676 PCT