Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g0449 ATGGCGCCGGTTTCAGCTCTTGCGAAGTACAAGCTCGTCTTCTTGGGAGACCAGTCCGTCGGCAAAACCAGCATCATCACTCGCTTCATGTACGACAAGTTCGACAACACCTATCAGGCTACAATTGGTATTGATTTTCTATCAAAAACAATGTATCTTGAAGATCGAACTGTACGACTGCAGCTATGGGATACAGCCGGACAGGAGAGATTCAGAAGTCTTATTCCAAGCTACATTAGGGACTCATCTGTTGCTGTTATTGTATATGATGTTGCAAGCCGGCAGACTTTCCTAAACACAGCAAAGTGGATTGAAGAGGTGCGAACAGAGAGAGGCAGTGATGTCATTATTGTTCTTGTTGGTAACAAGACTGATCTTGTTGAAAAGAGGCAAGTCTCAATAGAGGAAGGAGAAGCAAAAGCACGCGAACTCAATGTTATGTTTATTGAAACTAGTGCAAAAGCTGGGTTTAATATAAAGGCCCTATTTCGAAAAATTGCTGCAGCATTACCTGGGATGGAAACACTATCTGCTGCAAAACAAGAAGACATGGTTGATGTTAACTTGAAATCCTCAACAGCCAATCCTCAGTCCCAACCCCAAAGGAGGGTTGGAGTTGAGATTGGTGGAGAAATGGCGCCAGTGTCAGCTCTTGCAAAGTACAAGCTGGTTTTCTTGGGTGATCAGTCTGTTGGCAAAACCAGCATCATCACTCGCTTCATGTACGATAAATTCGATAACACTTATCAGGAGCTGGTTAGACAGATCACGGGTTTTACTGCGGGATCATGGGTGAAGCTTCCAGCTTCAATTGCATGTTGTATAAAGGGAATATCAGGGGAGAGTGTGACGGAGGATCAGGGCAGAATGGCTACAATTGGTATTGATTTTCTATCAAAAACTATGTATCTTGAAGATCGAACTGTTCGGCTGCAATTGTGGGATACAGCTGGACAGGAAAGATTTAGAAGTCTTATTCCGAGCTACATAAGGGACTCATCTGTTGCTGTCATTGTTTACGATGTTGCAAGCCGTCAGACTTTCCTAAATACATCAAAGTGGATTGAAGAGGTGCGCAGTGAGAGAGGCAGTGATGTTATTATTGTTCTTGTTGGGAACAAAACTGACCTTGTGGATAAGAGGCAAGTCTCGACAGAGGAAGGGGAAGCTAAGTCTCGCGAGCTAAATGTCATGTTTATTGAAGCTAGTGCCAAAGCTGGCTTTAATATTAAGGCCCTCTTTCGGAAAATTGCCGCTGCATTACCTGGAATGGAAACACTATCTTCTTCAAAACAAGAAGATATGGTTGATGTGAACCTTAAATCTGGTGGTGGAGCTGATTCTCAAACCCAGGAGGGTGGATGTGCTTGCTGA 1374 0.4367 MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQTFLNTAKWIEEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAALPGMETLSAAKQEDMVDVNLKSSTANPQSQPQRRVGVEIGGEMAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQELVRQITGFTAGSWVKLPASIACCIKGISGESVTEDQGRMATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQTFLNTSKWIEEVRSERGSDVIIVLVGNKTDLVDKRQVSTEEGEAKSRELNVMFIEASAKAGFNIKALFRKIAAALPGMETLSSSKQEDMVDVNLKSGGGADSQTQEGGCAC* 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g0449 457 PANTHER GTP-BINDING PROTEIN RAB6 1 202 - -
Amo05g0449 457 PANTHER DRAB5-RELATED 212 457 - -
Amo05g0449 457 CDD Rab6 221 421 - -
Amo05g0449 457 SMART ran_sub_2 15 218 - -
Amo05g0449 457 PRINTS Transforming protein P21 ras signature 113 126 - -
Amo05g0449 457 PRINTS Transforming protein P21 ras signature 10 31 - -
Amo05g0449 457 PRINTS Transforming protein P21 ras signature 51 73 - -
Amo05g0449 457 PRINTS Transforming protein P21 ras signature 33 49 - -
Amo05g0449 457 PRINTS Transforming protein P21 ras signature 148 170 - -
Amo05g0449 457 Gene3D - 6 207 IPR027417 -
Amo05g0449 457 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 9 175 IPR027417 -
Amo05g0449 457 SMART rab_sub_5 221 424 - -
Amo05g0449 457 SMART rab_sub_5 10 173 - -
Amo05g0449 457 Pfam Ras family 11 169 IPR001806 GO:0003924|GO:0005525
Amo05g0449 457 Pfam Ras family 290 420 IPR001806 GO:0003924|GO:0005525
Amo05g0449 457 ProSiteProfiles small GTPase Rho family profile. 3 178 - -
Amo05g0449 457 Gene3D - 217 451 IPR027417 -
Amo05g0449 457 ProSiteProfiles small GTPase Ras family profile. 220 457 IPR001806 GO:0003924|GO:0005525
Amo05g0449 457 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 220 426 IPR027417 -
Amo05g0449 457 PANTHER GTP-BINDING PROTEIN RAB6 212 457 - -
Amo05g0449 457 SMART rho_sub_3 223 423 IPR001806 GO:0003924|GO:0005525
Amo05g0449 457 SMART rho_sub_3 12 172 IPR001806 GO:0003924|GO:0005525
Amo05g0449 457 CDD Rab6 10 170 - -
Amo05g0449 457 ProSiteProfiles small GTPase Ras family profile. 5 238 IPR001806 GO:0003924|GO:0005525
Amo05g0449 457 ProSiteProfiles small GTPase Rab1 family profile. 5 216 - -
Amo05g0449 457 Pfam Ras of Complex, Roc, domain of DAPkinase 222 252 - -
Amo05g0449 457 ProSiteProfiles small GTPase Rho family profile. 214 427 - -
Amo05g0449 457 ProSiteProfiles small GTPase Rab1 family profile. 216 457 - -
Amo05g0449 457 TIGRFAM small_GTP: small GTP-binding protein domain 288 417 IPR005225 GO:0005525
Amo05g0449 457 TIGRFAM small_GTP: small GTP-binding protein domain 9 166 IPR005225 GO:0005525
Amo05g0449 457 PANTHER DRAB5-RELATED 1 202 - -
Amo05g0449 457 SMART ras_sub_4 218 424 - -
Amo05g0449 457 SMART ras_sub_4 7 173 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g0449 Amo-Chr5 5282670 5289676 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g0449 K07893 - gmx:100794537 378.637
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo05g0449 05 5282670 5289676 Amo01g1550 01 32586148 32590499 PCT
Amo05g0449 05 5282670 5289676 Amo11g1110 11 34080529 34084873 PCT
Amo01g1550 01 32586148 32590499 Amo05g0449 05 5282670 5289676 PCT
Amo11g1110 11 34080529 34084873 Amo05g0449 05 5282670 5289676 PCT