Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo11g1092 ATGAAATCAAAGAGAGGAAAACGCTCAGAGGCCTTTTGGCCTTCAATTGTGATGAAGAAATGGCTAAATATAAAGCCACAGGTATATGATTTTAGTGAAGATGAAGTAGACACTGAAACTGAAACTGAAACTGAAACTGAGAGTGAAGATGATGCTTGCTCTCTTAAAAATTCAAGACATCGTCTGCGTCATCATCATGAAGAAGATAATCCACTTAGAAGAACACAATCCAGATTCCCAACTCAAACAGTACCAGATGCATCTTGTAAGGGATACAAGCCGAAACATCGAAGAGGAAAATCTGAAACGTTGCGTGCACAATACATAAACACAAAGGAAGTGAGGATAACAGTTGGAACTTGGAATGTTGCTGGAAGACTTCCATCTAAGGATCTTGAGATTGAAGACTGGCTTTGTAGTGAAGAACCAGCAGATATCTACATCATTGGTTTCCAAGAGGTAGTTCCGTTAAATGCCGGAAATGTACTGGGAGCAGAGGACAATACACCGATCCGGAAATGGGAAGCAATCATTAGAAGAACTCTGAACAAAACTTCTGAATGTGAAAGTGAAGACAAAAGCCTCAGTGGCCCTCATTCTCCTGTACTAAGAACCTGTTCTGCTCCTGATGTTCTAGCAGACAGTATAGACACTAATCCATTAGATATGATGGACGAAGCGTACGGCAGAGCTTTCGATAATGATTATCTAGAACATGAGGAAGTGAACAACATACTCGGTATAGGGAAGAACTTACAGTTGAGAAGAGTATATGGTGTTGATATTAAGACTACGTTAGATTGGCCAGAACGTCCACTAGATGCAACTCCCATTGTTGATTCTGGCCCCAAGTTGCGAAGAGTACTAAGCAGCTCCGAATTGAACTGGAGGGGTAATGCTTTGGTGTATGGTGGTGGGATGACACGGTCACACCATAGTTCTGGAAACTTGAATTTGTTCTGGAAAGAGCAGAAGGTGGTGCCTGAAGAAGTAGTAACTGATCCCATTGCACATGTGTCTGACATGTTATCTGATGAGGAAGATGATACTTTTTCTGAATTGCCAAATGACAAGGATGATAATGGGCTAGGCACCATGAAATCGCATCCTGCTTATGTTCGAATCGTTAGCAAGCAGATGGTGGGGATCTATGTATCTGTCTGGGTGCAAAGGAAGTTAAGAAGACACATTAATAACTTGAAAGTTTCTCCGGTTGGAGTTGGTCTTATGGGCTACATGGGAAACAAGGGATCTGTTTCAGTTAGTATGTCTCTCTTTCATTCGCGCCTATGTTTTGTTTGTTCCCATCTGACTTCAGGTCAGAAAGATGGGGCTGAGCAAAGACGAAATGCAGATGTTAATGAAATTCTGCGACGCACATGCTTCTCGTCTGTCCTTGATTCAGATCAACCCCAGACAATCCCATCTCATGATCAGATGTTCTGGTTTGGGGACCTAAATTATCGTATCAACATGTTAGATGCCGAGGTTCGAAAGCTAGTAGCTCTGAAGAAATGGGATGAATTGATGAATTATGATCAGCTAAGCAATGAGTTACATAGTGGACATGTATTTGAAGGATGGAAAGAAGGACTGATAAATTTCCCACCAACTTACAAGTATGAATTCAATTCTGATAAATATGTTGGAGAGAACCCAAAAGAAGGGGAAAAGAAGAGATCTCCAGCATGGTGTGATCGTATATTGTGGCAAGGAAAAGGAATAAGGCAACTTGAATATAGGCGTGCAGAAAATAAGCTTTCAGATCATAGACCTGTTAGTTCAATCTTCTCTGTCGATGTTGAAGTCTTCGACGAACGCAAGCTACAACGAGCTCTAAATTTCACATGTGCTGTAGTCCACCCAGAGGTTTTTCTTCCAAATGATGATGGCTTGCAATTTTACTAG 1908 0.4135 MKSKRGKRSEAFWPSIVMKKWLNIKPQVYDFSEDEVDTETETETETESEDDACSLKNSRHRLRHHHEEDNPLRRTQSRFPTQTVPDASCKGYKPKHRRGKSETLRAQYINTKEVRITVGTWNVAGRLPSKDLEIEDWLCSEEPADIYIIGFQEVVPLNAGNVLGAEDNTPIRKWEAIIRRTLNKTSECESEDKSLSGPHSPVLRTCSAPDVLADSIDTNPLDMMDEAYGRAFDNDYLEHEEVNNILGIGKNLQLRRVYGVDIKTTLDWPERPLDATPIVDSGPKLRRVLSSSELNWRGNALVYGGGMTRSHHSSGNLNLFWKEQKVVPEEVVTDPIAHVSDMLSDEEDDTFSELPNDKDDNGLGTMKSHPAYVRIVSKQMVGIYVSVWVQRKLRRHINNLKVSPVGVGLMGYMGNKGSVSVSMSLFHSRLCFVCSHLTSGQKDGAEQRRNADVNEILRRTCFSSVLDSDQPQTIPSHDQMFWFGDLNYRINMLDAEVRKLVALKKWDELMNYDQLSNELHSGHVFEGWKEGLINFPPTYKYEFNSDKYVGENPKEGEKKRSPAWCDRILWQGKGIRQLEYRRAENKLSDHRPVSSIFSVDVEVFDERKLQRALNFTCAVVHPEVFLPNDDGLQFY* 636
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo11g1092 635 Gene3D Endonuclease/exonuclease/phosphatase 95 201 IPR036691 -
Amo11g1092 635 MobiDBLite consensus disorder prediction 49 74 - -
Amo11g1092 635 MobiDBLite consensus disorder prediction 32 75 - -
Amo11g1092 635 SUPERFAMILY DNase I-like 104 618 IPR036691 -
Amo11g1092 635 MobiDBLite consensus disorder prediction 33 48 - -
Amo11g1092 635 PANTHER TYPE IV INOSITOL POLYPHOSPHATE 5-PHOSPHATASE 9 7 627 IPR045849 GO:0004445|GO:0046855
Amo11g1092 635 Gene3D Endonuclease/exonuclease/phosphatase 336 622 IPR036691 -
Amo11g1092 635 SMART i5p_5 306 605 IPR000300 GO:0016791|GO:0046856
Amo11g1092 635 PANTHER TYPE I INOSITOL POLYPHOSPHATE 5-PHOSPHATASE 2 7 627 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo11g1092 Amo-Chr11 32671941 32678468 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo11g1092 365 606 Acyl Lipid Metabolism Gene Families AT1G65580 31.250 3.78e-36 143
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo11g1092 K24221 - gmx:100807214 982.245
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo01g1525 01 31661059 31667505 Amo11g1092 11 32671941 32678468 hybridization
Amo05g0462 05 5384287 5387344 Amo11g1092 11 32671941 32678468 PCT
Amo11g1092 11 32671941 32678468 Amo05g0462 05 5384287 5387344 PCT