Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g1525 ATGAAATCAAAGAGAGGAAAACGCTCAGAGGCCTTTTGGCCTTCAATTGTGATGAAGAAATGGCTAAATATAAAGCCACAGGTATATGATTTTAGTGAAGATGAAGTAGACACTGAAACTGAAACTGAAACTGAAACTGAGAGTGAAGATGATGCTTGCTCTCTTAAAAATTCAAGACATCGTCTGCGTCATCATCATGAAGAAGATAATCCACTTAGAAGAACACAATCCAGATTCCCAACTCAAACAGTACCAGACATTGAAAAAGAAAAGATATGTTCTTATTTGGAATCAAATTTGCCTAACTATGGAGCTGAAATATTCTTTTCCAAAATAAAGGAAATTGAAACACTTAAAAATGTCAAACAAAGCAAGAAGTGGAGAAAGTCAAAGAAAGTTTCCAAGCCAAAGTTCAGTGCTATTTGTAATTCAGATGCATCTTGTAAGGGATACAAGCCGAAACATCGAAGAGGAAAATCTGAAACGTTGCGTGCACAATACATAAACACAAAGGAAGTGAGGATAACAGTTGGAACTTGGAATGTTGCTGGAAGACTTCCATCTAAGGATCTTGAGATTGAAGACTGGCTTTGTAGTGAAGAACCAGCAGATATCTACATCATTGGTTTCCAAGAGGTAGTTCCGTTAAATGCCGGAAATGTACTGGGAGCAGAGGACAATACACCGATCCGGAAATGGGAAGCAATCATTAGAAGAACTCTGAACAAAACTTCTGAATGTGAAAGTGAAGACAAAAGCCTCAGTGGCCCTCATTCTCCTGTACTAAGAACCTGTTCTGCTCCTGATGTTCTAGCAGACAGTATAGACACTAATCCATTAGATATGATGGACGAAGCGTACGGCAGAGCTTTCGATAATGATGATCTAGAACATGAGGAAGTGAACAACATACTCGGTATAGGGAAGAACTTACAGTTGAGAAGAGTATATGGTGTTGATATTAAGACTACGTTAGATTGGCCAGAACGTCCACTAGATGCAACTCCCATTGTTGATTCTGGCCCCAAGTTGCGAAGAGTACTAAGCAGCTCCGAATTGAACTGGAGGGGTAATGCTTTGGTGTATGGTGGTGGGATGACACGGTCACACCATAGTTCTGGAAACTTGAATTTGTTCTGGAAAGAGCAGAAGGTGGTGCCTGAAGAAGTAGTAACTGATCCCATTGCACATGTGTCTGACATGTTATCTGATGAGGAAGATGATACTTTTTCTGAATTGCCAAATGACAAGGATGATAATGGGCTAGGCACCATGAAATCGCATCCTGCTTATGTTCGAATCGTTAGCAAGCAGATGGTGGGGATCTATGTATCTGTCTGGGTGCAAAGGAAGTTAAGAAGACACATTAATAACTTGAAAGTTTCTCCGGTTGGAGTTGGTCTTATGGGCTACATGGGAAACAAGGGATCTGTTTCAGTTAGTATGTCTCTCTTTCATTCGCGCCTATGTTTTGTTTGTTCCCATCTGACTTCAGGTCAGAAAGATGGGGCTGAGCAAAGACGAAATGCAGATGTTAATGAAATTCTGCGACGCACATGCTTCTCGTCTGTCCTTGATTCAGATCAACCCCAGACAATCCCATCTCATGATCAGATGTTCTGGTTTGGGGACCTAAATTATCGTATCAACATGTTAGATGCCGAGGTTCGAAAGCTAGTAGCTCTGAAGAAATGGGATGAATTGATGAATTATGATCAGCTAAGCAATGAGTTACATAGTGGACATGTATTTGAAGGATGGAAAGAAGGACTGATAAATTTCCCACCAACTTACAAGTATGAATTCAATTCTGATAAATATGTTGGAGAGAACCCAAAAGAAGGGGAAAAGAAGAGATCTCCAGCATGGTGTGATCGTATATTGTGGCAAGGAAAAGGAATAAGGCAACTTGAATATAGGCGTGCAGAAAATAAGCTTTCAGATCATAGACCTGTTAGTTCAATCTTCTCTGTCGATGTTGAAGTCTTTGACCAACGCAAGCTACAACGAGCTCTAAATTTCACATGTGCTGTAGTCCACCCAGAGGTTTTTCTTCCAAATGATGATGGCTTGCAATTTTACTAG 2085 0.4038 MKSKRGKRSEAFWPSIVMKKWLNIKPQVYDFSEDEVDTETETETETESEDDACSLKNSRHRLRHHHEEDNPLRRTQSRFPTQTVPDIEKEKICSYLESNLPNYGAEIFFSKIKEIETLKNVKQSKKWRKSKKVSKPKFSAICNSDASCKGYKPKHRRGKSETLRAQYINTKEVRITVGTWNVAGRLPSKDLEIEDWLCSEEPADIYIIGFQEVVPLNAGNVLGAEDNTPIRKWEAIIRRTLNKTSECESEDKSLSGPHSPVLRTCSAPDVLADSIDTNPLDMMDEAYGRAFDNDDLEHEEVNNILGIGKNLQLRRVYGVDIKTTLDWPERPLDATPIVDSGPKLRRVLSSSELNWRGNALVYGGGMTRSHHSSGNLNLFWKEQKVVPEEVVTDPIAHVSDMLSDEEDDTFSELPNDKDDNGLGTMKSHPAYVRIVSKQMVGIYVSVWVQRKLRRHINNLKVSPVGVGLMGYMGNKGSVSVSMSLFHSRLCFVCSHLTSGQKDGAEQRRNADVNEILRRTCFSSVLDSDQPQTIPSHDQMFWFGDLNYRINMLDAEVRKLVALKKWDELMNYDQLSNELHSGHVFEGWKEGLINFPPTYKYEFNSDKYVGENPKEGEKKRSPAWCDRILWQGKGIRQLEYRRAENKLSDHRPVSSIFSVDVEVFDQRKLQRALNFTCAVVHPEVFLPNDDGLQFY* 695
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g1525 694 MobiDBLite consensus disorder prediction 32 74 - -
Amo01g1525 694 SUPERFAMILY DNase I-like 163 677 IPR036691 -
Amo01g1525 694 PANTHER TYPE I INOSITOL POLYPHOSPHATE 5-PHOSPHATASE 2 7 79 - -
Amo01g1525 694 PANTHER TYPE I INOSITOL POLYPHOSPHATE 5-PHOSPHATASE 2 125 686 - -
Amo01g1525 694 SMART i5p_5 365 664 IPR000300 GO:0016791|GO:0046856
Amo01g1525 694 MobiDBLite consensus disorder prediction 49 74 - -
Amo01g1525 694 PANTHER TYPE IV INOSITOL POLYPHOSPHATE 5-PHOSPHATASE 9 7 79 IPR045849 GO:0004445|GO:0046855
Amo01g1525 694 PANTHER TYPE IV INOSITOL POLYPHOSPHATE 5-PHOSPHATASE 9 125 686 IPR045849 GO:0004445|GO:0046855
Amo01g1525 694 MobiDBLite consensus disorder prediction 33 48 - -
Amo01g1525 694 Gene3D Endonuclease/exonuclease/phosphatase 395 681 IPR036691 -
Amo01g1525 694 Gene3D Endonuclease/exonuclease/phosphatase 154 260 IPR036691 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g1525 Amo-Chr1 31661059 31667505 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g1525 424 665 Acyl Lipid Metabolism Gene Families AT1G65580 30.903 1.18e-35 142
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g1525 K24221 - gmx:100794203 932.554
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo01g1525 01 31661059 31667505 Amo11g1092 11 32671941 32678468 hybridization
Amo05g0462 05 5384287 5387344 Amo01g1525 01 31661059 31667505 PCT
Amo01g1525 01 31661059 31667505 Amo05g0462 05 5384287 5387344 PCT