Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo11g0327 ATGCATCAGGGATATCCAACTGAAACACTAGCCAGATTTCTCAAAGCAAGGGACTGGAATGTTGCCAAAGCCCATAAAATGATAATCGATTGTTTACAATGGAGAGTTGAAAATGAGATTGACAATGTTTTATCAAAGCCAATCCCCGTAGATGTGTACAAAGCCGTGCGAGATTCTCAACTCATTGGAATGTCTGGTTACTCAAAGGAGGGCCTTCCTGTCATCGCTGTTGGTGTTGGGCTCAGCACATTTGACAAAGCATCCGACAAATACTATGTGCAATCGCACATCCAAATGAACGAATATAGGGATCGGGTGGTCTTGCCAACAGCTTCGAAGAAGCAAGGACGTTACATTGGCACTTGTGTGAAAGTCTTGGATATGACTGGTTTGAAAATTTCAGCGCTGAACCAACTGAGGCTTTTGACTGCTATATCTACAATTGACGACTTGAACTACCCGGAAAAGACAGACACATATTATATTGTTAACGTGCCGTATGTATTCTCGGCGTGTTGGAAGGTTGTAAAGCCCCTTTTGCAAGAAAGAACGAGGAAGAAAGTTCAGGTGCTGCAAGGATGTGGGAAGGAGGAATTACTCAAGGTAATGGACTATCAGTCTCTCCCACACTTCTGCAGAAAAGAAGGTTCCGGATCCTCGAAACACCGCGTAGCAGGAGACACTGAAAATTGCTTCTCCTTCGACAGCAACTTCCACCAACATCTCTACAACTTCATCAAGCAGCAAGCCGTCGTCATGCAAACCATATCACCAATCAGACAGGGATCCTTCTATGTTGACTTACCCGAGCCAGACCCCGACGACGCCAAGATTGCCAAGACCATCGAATCCGAGCTCCACAAGTTGGAAATTCAGAATGGTTCAATGAATGGTGTTGCGGTTAATGGACACTAA 915 0.4492 MHQGYPTETLARFLKARDWNVAKAHKMIIDCLQWRVENEIDNVLSKPIPVDVYKAVRDSQLIGMSGYSKEGLPVIAVGVGLSTFDKASDKYYVQSHIQMNEYRDRVVLPTASKKQGRYIGTCVKVLDMTGLKISALNQLRLLTAISTIDDLNYPEKTDTYYIVNVPYVFSACWKVVKPLLQERTRKKVQVLQGCGKEELLKVMDYQSLPHFCRKEGSGSSKHRVAGDTENCFSFDSNFHQHLYNFIKQQAVVMQTISPIRQGSFYVDLPEPDPDDAKIAKTIESELHKLEIQNGSMNGVAVNGH* 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo11g0327 304 PANTHER OS09G0258000 PROTEIN 1 300 - -
Amo11g0327 304 SMART sec14_4 49 217 IPR001251 -
Amo11g0327 304 Gene3D - 2 232 IPR036865 -
Amo11g0327 304 PANTHER - 1 300 - -
Amo11g0327 304 SMART CRAL_TRIO_N_2 6 31 IPR011074 -
Amo11g0327 304 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 49 209 IPR001251 -
Amo11g0327 304 SUPERFAMILY CRAL/TRIO N-terminal domain 4 45 IPR036273 -
Amo11g0327 304 CDD SEC14 53 211 IPR001251 -
Amo11g0327 304 Pfam CRAL/TRIO domain 60 211 IPR001251 -
Amo11g0327 304 SUPERFAMILY CRAL/TRIO domain 52 211 IPR036865 -
Amo11g0327 304 Pfam CRAL/TRIO, N-terminal domain 5 30 IPR011074 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo11g0327 Amo-Chr11 5003433 5007771 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo11g0327 1 289 Acyl Lipid Metabolism Gene Families AT1G55840 70.345 1.80e-163 455
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo11g0327 - - gmx:100817955 533.102
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo11g0327 11 5003433 5007771 Amo11g0327 11 5003433 5007771 ECH
Amo11g0327 11 5003433 5007771 Amo01g0335 01 5342079 5346054 hybridization
Amo11g0327 11 5003433 5007771 Amo07g0233 07 2128694 2131970 PCT
Amo07g0233 07 2128694 2131970 Amo11g0327 11 5003433 5007771 PCT