Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g0335 ATGGGTATTTGCAACCAGGATGCAATCAAGCAGTTGCAATCCCTGATGGAAAATGTGAATGAGCAGCAGAAGATCACATTCCAGAACATGCATCAGGGATATCCAACTGAAACACTAGCCAGATTTCTCAAAGCAAGGGACTGGAATGTTGCCAAAGCCCATAAAATGATAATCGATTGTTTACAATGGAGAGTTGAAAATGAGATTGACAATGTTTTATCAAAGCCAATCCCCGTAGATGTGTACAAAGCCGTGCGAGATTCTCAACTCATTGGAATGTCTGGTTACTCAAAGGAGGGCCTTCCTGTCATCGCTGTTGGTGTTGGGCTCAGCACATTTGACAAAGCATCCGACAAATACTATGTGCAATCGCACATCCAAATGAACGAATATAGGGATCGGGTGGTCTTGCCAACAGCTTCGAAGAAGCAAGGACGTTACATTGGCACTTGTGTGAAAGTCTTGGATATGACTGGTTTGAAAATTTCAGCGCTGAACCAACTGAGGCTTTTGACTGCTATATCTACAATTGACGACTTGAACTACCCGGAAAAGACAGACACATATTATATTGTTAACGTGCCGTATGTATTCTCGGCGTGTTGGAAGGTTGTAAAGCCCCTTTTGCAAGAAAGAACGAGGAAGAAAGTTCAGGTGCTGCAAGGTTGTGGGAAGGAGGAATTACTCAAGGTAATGGACTATCAGTCTCTCCCACACTTCTGCAGAAAAGAAGGTTCCGGATCCTCGAAACACCGCGTAGCAGGAGACACTGAAAATTGCTTCTCCTTCGACAGCAGCTTCCACCAACAGCTCTACAACTTCATCAAGCAGCAAGCCGTCGTCATGCAAACCATATCACCAATCAGACAGGGATCCTTCTATGTTGACTTACCGGAGCCAGACCCCGACGACGCCAAGATTGCCAAGACCATCGAATCCGAGCTTCACAAGTTGGAAATTCAGAATGGTGTTGCGGTTAATGGACACTAA 990 0.4505 MGICNQDAIKQLQSLMENVNEQQKITFQNMHQGYPTETLARFLKARDWNVAKAHKMIIDCLQWRVENEIDNVLSKPIPVDVYKAVRDSQLIGMSGYSKEGLPVIAVGVGLSTFDKASDKYYVQSHIQMNEYRDRVVLPTASKKQGRYIGTCVKVLDMTGLKISALNQLRLLTAISTIDDLNYPEKTDTYYIVNVPYVFSACWKVVKPLLQERTRKKVQVLQGCGKEELLKVMDYQSLPHFCRKEGSGSSKHRVAGDTENCFSFDSSFHQQLYNFIKQQAVVMQTISPIRQGSFYVDLPEPDPDDAKIAKTIESELHKLEIQNGVAVNGH* 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g0335 329 Gene3D - 4 295 IPR036865 -
Amo01g0335 329 CDD SEC14 82 240 IPR001251 -
Amo01g0335 329 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 78 238 IPR001251 -
Amo01g0335 329 Pfam CRAL/TRIO domain 89 240 IPR001251 -
Amo01g0335 329 Coils Coil 5 25 - -
Amo01g0335 329 Pfam CRAL/TRIO, N-terminal domain 8 59 IPR011074 -
Amo01g0335 329 PANTHER - 1 325 - -
Amo01g0335 329 SMART CRAL_TRIO_N_2 35 60 IPR011074 -
Amo01g0335 329 PANTHER OS09G0258000 PROTEIN 1 325 - -
Amo01g0335 329 SUPERFAMILY CRAL/TRIO N-terminal domain 11 74 IPR036273 -
Amo01g0335 329 SMART sec14_4 78 246 IPR001251 -
Amo01g0335 329 SUPERFAMILY CRAL/TRIO domain 81 240 IPR036865 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g0335 Amo-Chr1 5342079 5346054 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g0335 29 318 Acyl Lipid Metabolism Gene Families AT1G55840 70.790 3.35e-165 460
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g0335 - - gmx:100817955 563.148
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo11g0327 11 5003433 5007771 Amo01g0335 01 5342079 5346054 hybridization
Amo01g0335 01 5342079 5346054 Amo07g0233 07 2128694 2131970 PCT
Amo07g0233 07 2128694 2131970 Amo01g0335 01 5342079 5346054 PCT