Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo07g0233 ATGGATGCATGGAATGATGAAGCTATGAAGCAGTTTCAGTCCCTTCTGGAAACCTTGGATGAACAACACAAGAACACATTCCAGAATATGCACCAGGGTTATCCAAGAGAAACATTAGTACGTTTTCTCAAAGCAAGGGATGGGAATGTTCCCAAAGCACATAAAATGTTAATTGATTGCTTGCAATGGAGAGTGGAAAATGAGATTGACAATGTTTTAGCTAGGCCAATCCCGGCCGATTCGTACAGAAACGTGAGAGATTCGCAACTCATTGGAATGTCTGGTTACACAAAAGAGGGTCTACCAGTCATTGCTGTTGGTGTTGGTCTTAGCACATATGGAAAAGTTTCTGACAAATACTATGTACAATCACACATCCAAATGAATGAATATAGGGATAGGGTGATCTTGCCAACAGCTACCAAGAATCATGGAAGATACATTGGTACCTGTGTGAAAGTCTTGGATATGACAGGCCTAAGACTATCAGCACTGAACCAAATGAAGCTTTTGACATCTATATCTACCATAGATGACTTGAATTATCCAGAAAAGACAGACACATACTATATTGTCAATGCTCCATATGTATTCTCTGCATGTTGGAAGGTTGTAAAGCCTCTGTTGCAAGAAAGAACAAGGAAGAAAGTTCAAGTGCTGCAAGGTTGTGGTAGGGAGGAATTACTTAAGGACTCATCAAAGTTAACCAAACACAATGCAACAATGAATGCTGAAAACTGCTACTCCCTTGATCATGTCTTCCATAAACAACTTTATAATTATATGAAGCAGCAAGCTATGATAATGGAGTCCATATCACAAATCAAACAGGATTCTTTCTATGTAGAATTGCCAGAGACAGACCCAGATGATGCCAAAATTGTCAAGACTATAGAAATTGAGTTCAGGAAAGTGGAAAGCAAGAATGGCCTAAATAATTCACTAAATGGTGTTGCTGTTAAAGATGAAGATAACTACTACCCCAACACAAGTGCCTCAGCCAATACTCCAATAGTAAAGGACACACATCAAGGATTTTGA 1041 0.39 MDAWNDEAMKQFQSLLETLDEQHKNTFQNMHQGYPRETLVRFLKARDGNVPKAHKMLIDCLQWRVENEIDNVLARPIPADSYRNVRDSQLIGMSGYTKEGLPVIAVGVGLSTYGKVSDKYYVQSHIQMNEYRDRVILPTATKNHGRYIGTCVKVLDMTGLRLSALNQMKLLTSISTIDDLNYPEKTDTYYIVNAPYVFSACWKVVKPLLQERTRKKVQVLQGCGREELLKDSSKLTKHNATMNAENCYSLDHVFHKQLYNYMKQQAMIMESISQIKQDSFYVELPETDPDDAKIVKTIEIEFRKVESKNGLNNSLNGVAVKDEDNYYPNTSASANTPIVKDTHQGF* 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo07g0233 346 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 78 230 IPR001251 -
Amo07g0233 346 Coils Coil 5 25 - -
Amo07g0233 346 SUPERFAMILY CRAL/TRIO domain 80 230 IPR036865 -
Amo07g0233 346 Pfam CRAL/TRIO, N-terminal domain 8 59 IPR011074 -
Amo07g0233 346 PANTHER OS09G0258000 PROTEIN 3 322 - -
Amo07g0233 346 CDD SEC14 82 238 IPR001251 -
Amo07g0233 346 Gene3D - 1 273 IPR036865 -
Amo07g0233 346 SUPERFAMILY CRAL/TRIO N-terminal domain 13 74 IPR036273 -
Amo07g0233 346 SMART sec14_4 85 244 IPR001251 -
Amo07g0233 346 Pfam CRAL/TRIO domain 89 222 IPR001251 -
Amo07g0233 346 SMART CRAL_TRIO_N_2 35 60 IPR011074 -
Amo07g0233 346 PANTHER - 3 322 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo07g0233 Amo-Chr7 2128694 2131970 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo07g0233 1 316 Acyl Lipid Metabolism Gene Families AT5G47730 60.245 1.60e-141 402
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo07g0233 - - gmx:100817955 494.197
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo11g0327 11 5003433 5007771 Amo07g0233 07 2128694 2131970 PCT
Amo01g0335 01 5342079 5346054 Amo07g0233 07 2128694 2131970 PCT
Amo07g0233 07 2128694 2131970 Amo11g0327 11 5003433 5007771 PCT
Amo07g0233 07 2128694 2131970 Amo01g0335 01 5342079 5346054 PCT