Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo08g1086 ATGGGAAACAGAAACAGCCTTTTGTTTTTTATCCTTGTTCTGATGTGTCATGGTGTAACCTTGACAATGGGGTTATGGAGGAATCATGATGATGTAGAAACGATGTTCTTGATGAAGAACTCCAAGAGTGTGGTTAAGACAGATGCTGGTGAGATGAGAGTTCTTGAAAGCTATGGTGATGCTAAGCTTATGGAGAGGCGCTTGCATATTGGATTCATCTCCATGGAGCCAAGGTCACTCTTCGTTCCTCAGTATATTGACTCAAGCTTCATCATTTTCCTCCATGAAGGGGAAGCAAAGCTGGGATTCATGTATAGAGGTAAGCTTGCAGAAAGAACATTGAAGATGGGGGATGTGTATAGAATCCCAGCTGGTTCAGCATTCTATTTGGTGAATATTGGTGAAGGTCAGAAACTTCACATTATCTGCAGCATTGATCCCTCAGAGGCAGTGGGAGTTGGTACTTTCCAGTCCTTCTATCTTGGAGGAGGAGCAAATCCAGCTTCAGTACTTTCTGGCTTCGGAACAGATATCCTTGAAGCTGCCTTTAACGTATCAGCAGAAGAAGTTAGGAAAATGTTCACAAGGCAACATGAGGGTCCAATTGTGAATCTGGATCAGCAAGACACAGGTTTGTGGAGCAAGTTCCTTCAATTGAAGGATGAGGACAAATTGCAACACCTGAAGGGAATGGTGCTAGACCAGCAAGAAGAAGATTTTGATGATGAAGATAATGATGGACAAGAAGAGGAGAAGCAAAGAGTATGGTCATGGAGGAAGCTCTTAGACTCAGTTGTTTGTGATGAGTTAAAGAAAGCATGGAACCCCAACAAGGGTATGGGTAAGAAGCCCCCTCATATTTGCAACCTCTATGACAGAGCACCAGATTTCATCAACAGCCATGGTTGGAGTGTTGCTGTTGATGGCTCAGATTATTCTCCACTCAAAATGTCTGGTGTTGGCATTTATCATGTTAATCTCTCAGCGGGAGCGATGATGACGCCACACATGAATCCAATGGCAACAGAGTATGGCATAGTGTTGAGAGGGAGTGGAAGAATCCAGATAGTGTTTCCAAACGGAACCAATGCAATGGATGCAGAGATCAAAGAAGGGGATGTGTTCTTTATCCCAAGGTACTTCCCTTTCTGCCAAATAGCATCAAAGGACCAACCATTGGAGTTCTTTGGCTTCACCACCTCTGCAAGTAAGAACAGGCCACAGTTTCTTGTGGGAGCCACGTCACTCATGAGGACCATGATGGGTCCTGAGCTCGCTGCTGCCTTTGGTGTGAGCGAGGAAACCATGCGCCACATGGTTGATGCACAGCATGAGGATGTCATACTTCCATATCCACATCATCAAGATCATAACAAGGAAGTGGTTGAGGTTGACACCATTCCAAAGCTTATAAGGAATGCCATGGTTTTGGGATGGTAA 1440 0.4451 MGNRNSLLFFILVLMCHGVTLTMGLWRNHDDVETMFLMKNSKSVVKTDAGEMRVLESYGDAKLMERRLHIGFISMEPRSLFVPQYIDSSFIIFLHEGEAKLGFMYRGKLAERTLKMGDVYRIPAGSAFYLVNIGEGQKLHIICSIDPSEAVGVGTFQSFYLGGGANPASVLSGFGTDILEAAFNVSAEEVRKMFTRQHEGPIVNLDQQDTGLWSKFLQLKDEDKLQHLKGMVLDQQEEDFDDEDNDGQEEEKQRVWSWRKLLDSVVCDELKKAWNPNKGMGKKPPHICNLYDRAPDFINSHGWSVAVDGSDYSPLKMSGVGIYHVNLSAGAMMTPHMNPMATEYGIVLRGSGRIQIVFPNGTNAMDAEIKEGDVFFIPRYFPFCQIASKDQPLEFFGFTTSASKNRPQFLVGATSLMRTMMGPELAAAFGVSEETMRHMVDAQHEDVILPYPHHQDHNKEVVEVDTIPKLIRNAMVLGW* 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo08g1086 479 Pfam Cupin 289 436 IPR006045 -
Amo08g1086 479 Pfam Cupin 41 190 IPR006045 -
Amo08g1086 479 Gene3D Jelly Rolls 28 218 IPR014710 -
Amo08g1086 479 CDD cupin_7S_vicilin-like_N 44 208 - -
Amo08g1086 479 CDD cupin_7S_vicilin-like_C 295 445 - -
Amo08g1086 479 PANTHER OS03G0336100 PROTEIN 1 458 - -
Amo08g1086 479 Coils Coil 233 253 - -
Amo08g1086 479 SUPERFAMILY RmlC-like cupins 42 445 IPR011051 -
Amo08g1086 479 Gene3D Jelly Rolls 280 452 IPR014710 -
Amo08g1086 479 PANTHER OS03G0336100 PROTEIN-RELATED 1 458 - -
Amo08g1086 479 SMART Cupin_1_3 36 191 IPR006045 -
Amo08g1086 479 SMART Cupin_1_3 288 437 IPR006045 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo08g1086 Amo-Chr8 18322309 18324516 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo08g1086 43 449 Miscellaneous Gene Families AT2G18540 30.496 6.50e-45 165
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo08g1086 - - gmx:100818796 655.21
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo18g0445 18 5910405 5912067 Amo08g1086 08 18322309 18324516 hybridization
Amo08g1086 08 18322309 18324516 Amo13g0338 13 4567467 4570293 PCT
Amo13g0338 13 4567467 4570293 Amo08g1086 08 18322309 18324516 PCT