Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo06g3023 ATGGGGTGTGGAAAACTGAAGAGGTTTCTTGTTATGGTGTTGTTCATTGAACTTTTGGTGTGCTCAGTGGTGAGTGGAATTGGTGTTAACTGGGGAACACAAGCAACACACCCTTTGCCACCATCAACAGTGGTGAAAATGCTAAAAGACAATGGTATTCAGAAAGTGAAGCTTTTTGATGCTGACTCAAATATCTTAGAGGCTCTTAAGAAGACTCAGATCCAAGTCATGGTTGGTATCCCAAATGACATGCTTTACACACTTGCTAACAGTGTTCAAGCTGCTGAAAAATGGGTCTCAAAGAATATCTCAGCTCATATCTCATCTGGTGGAGTAGACATCAGGTATGTCGCCGTGGGAAATGAACCTTTCTTGTCAACTTACAATGGAACGTTCGAGTCCACAACCCTTCCGGCTCTTCAAAACATCCAGTCAGCTCTTGTGAAGGCTGGTTTGGGCAACAGGGTTAAAGTCACCACCCCTTTAAATGCTGATGTGTATCAAAGTTCGTCGGATAAACCTTCTGACGGTGACTTCAGGACAGACATCCATGATCTCATGATAAAAATTGTCAGTTTCTTGAGCCAGAACAATGCTCCATTCACTGTAAACATCTACCCTTTCATCAGCCTTTACGCCGATCCCAACTTCCCAATGGACTATGCCTTCTTCAATGGCTTCTCAAGTGCTATAAACGACAATGGAAAGATCTATGACAATGTCTTTGATGCTAACCATGATACTCTAGTATGGGCATTGCAGAAGAATGGCTTCGGAAACCTGCCCATTATTGTCGGAGAGATCGGGTGGCCTACAGATGGGGACCGGAATGCAAACCTTCAATATGCCCAACGCTTCAACCAAGGCTTCACGTCTAGATACCTTGGCGGAAAAGGTACTCCAATGAGGCCAGGTCCGATCGACGCCTACCTATTTAGCCTCATAGATGAAGATAGCAAAAGCATTCAGCCAGGTAACTTCGAACGCCACTGGGGATTGTTTTACTACGACGGAAAGCCAAAGTACCAACTCAGCCTTGGACCGACAAGTCCGAACGGCTTGGTAGCTGCTAGTGGCGTCGCATATCTTCCTAAAAAGTGGTGTATTATGAAGCCTTCGGCGAACCTCAACAGCGACCAAGTTGCGCCGAGTGTGTCTTATGCGTGCCAAAATGCTGATTGCACTAGTCTTGGATATGGAACTTCATGTGGAAATTTGGATGTTCAAGGTAACATATCTTATGCATTTAATAGCTATTTTCAGGTGAATGATCAAATGGACAGTGCATGCAAATTTCCTGGACTTTCTGTTGTCACCGAGAGAGATCCTTCAGTGGGTGATTGCAAATTCAAAATCATGATCCAGACAGATTCTGCTGTCAGAATTGGTTCTGTTAGAATATTGCTATTTGTATTCTTGTTTTTAGGTATTGTTGTGTAA 1440 0.4382 MGCGKLKRFLVMVLFIELLVCSVVSGIGVNWGTQATHPLPPSTVVKMLKDNGIQKVKLFDADSNILEALKKTQIQVMVGIPNDMLYTLANSVQAAEKWVSKNISAHISSGGVDIRYVAVGNEPFLSTYNGTFESTTLPALQNIQSALVKAGLGNRVKVTTPLNADVYQSSSDKPSDGDFRTDIHDLMIKIVSFLSQNNAPFTVNIYPFISLYADPNFPMDYAFFNGFSSAINDNGKIYDNVFDANHDTLVWALQKNGFGNLPIIVGEIGWPTDGDRNANLQYAQRFNQGFTSRYLGGKGTPMRPGPIDAYLFSLIDEDSKSIQPGNFERHWGLFYYDGKPKYQLSLGPTSPNGLVAASGVAYLPKKWCIMKPSANLNSDQVAPSVSYACQNADCTSLGYGTSCGNLDVQGNISYAFNSYFQVNDQMDSACKFPGLSVVTERDPSVGDCKFKIMIQTDSAVRIGSVRILLFVFLFLGIVV* 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo06g3023 479 Pfam Glycosyl hydrolases family 17 27 345 IPR000490 GO:0004553|GO:0005975
Amo06g3023 479 PANTHER GLUCAN ENDO-1,3-BETA-GLUCOSIDASE 5 15 458 - -
Amo06g3023 479 Pfam X8 domain 366 435 IPR012946 -
Amo06g3023 479 Gene3D Glycosidases 26 349 - -
Amo06g3023 479 ProSitePatterns Glycosyl hydrolases family 17 signature. 261 274 IPR000490 GO:0004553|GO:0005975
Amo06g3023 479 PANTHER GLUCAN ENDO-1,3-BETA-GLUCOSIDASE BG1-RELATED-RELATED 15 458 IPR044965 GO:0004553|GO:0005975
Amo06g3023 479 SMART X8_cls 366 450 IPR012946 -
Amo06g3023 479 Gene3D - 363 459 - -
Amo06g3023 479 SUPERFAMILY (Trans)glycosidases 27 345 IPR017853 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo06g3023 Amo-Chr6 96717762 96721225 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo06g3023 9 475 Glycoside Hydrolase AT4G31140 69.118 0.0 695
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo06g3023 K19893 - gmx:100775918 805.438
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo06g3023 06 96717762 96721225 Amo20g2417 20 112785757 112787667 PCT
Amo08g2018 08 32555407 32558621 Amo06g3023 06 96717762 96721225 PCT