Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g2417 ATGGCTCAAACAAAACGCATGCTATGGGCGTCTTGTTTGATCTTTGTCTTAGTTCAATGCCATCTACCAAGTGCAAAATGCTCACATGCTTTGTCAAATGTTGGCATAAACTGGGGTGCATTGACATCTCACCCTATAAATCCTTATACTGTTGTTGATCTCTTGAAGGACAACGGAATCAAGAAAGTTAAATTGTTCGATGTAGATTCCTGGACACTTGGTGCTCTTGCTGGTTCAGGCATTGAAGTCATGATTGGCATCCCTAATGACCAAATGGAAAGACTTTCTAACAGTGGCCAGGCTGAGCAATGGGTCAAGCAAAATCTCACCAAACATCTACATGGTGGTGTCGACATCAGATACATATCTGTTGGAAACGAGCCTTTCTTGGCGAGCTATGAAAACAAGTATAGAAGTTCTACATTTCCAGCAATGAAGAGTATCCAGAAAGCTGTTGAGAAGGCAGGAGTTGCAGAGCAAGTTAAGGTTACTTCGTGTTTGAATGCAGATGTGTTGGATTCAGGTTCGGACAAGCCCTCGGACGGACAGTTTCGAAGTGACATCAAAGATGTCATGAAAGAAATACTCCAATTCCTTAACGACAATAACTCACCCTTCTTCATCAACATATACCCTTACCTTAGCCTTTATTTGAATCCAAATTTTCCAGAGGAACTGGCATTCTTTGACGCTGGTAGATCATTTGAAGACAAGGGTGCAACTTACACAAATGTGTTTGATGCAAGTGTAGATACCCTTGTTTGGGCACTAAAGAAGGAGGGCTACTCCGACATGAAAATCGTTGTTGGCGAAGTTGGATGGCCGACGGACGGCCACAAAAGCGCCAACAAAGATAAAGCAAGAAGATTCTACCATGGATTCCTTAAGAAACTAGGAAACCAACAAGGAAGCCCTCTTCATCCTGGAGTCTTGGATGTGTATCTCTTTGGTCTTTTCGATGAGAATCTCAAGAACATTGAACCCGGGAAATTTGAGCGTCATTGGGGAATTTTCGAATACGATGGGAAGCCCAAGTTCCCTGTAGATTTTTCTGGTAAAGGAGAAGATCACAAATGGCCAGTGGGAGCAAAAGGGGTTAGATACTTAGAGAAGCAATGGTGTGTGTTAAGCGAAGATGTTAAAGACTTCAGTGGTCCTGTTTATGAGGCATTAGGGTATGCATGTGCAAATACTGATTGTACAAGCTTAGGATATGGTTGTTCTTGTGCCGATTTGGATATTCGTGGCAATGTTTCTTATGCTTTTAATCAATACTTTCAAGCAAGGGATCAAAGCGTTGAGGCATGCGATTTCGATGGACTGGCGGAAATTGTAACAAGTGATCCATCAAAAGGGACTTGTAAGTTCCCGATAGTCATTGAGAGTGCTGCAACTTCTCTTAAGACACGTGATGCAATAATCCATATCCTTCTTCTTGGCTTCGCTCTATTTTTTGTGACGTTTATGTGA 1470 0.4218 MAQTKRMLWASCLIFVLVQCHLPSAKCSHALSNVGINWGALTSHPINPYTVVDLLKDNGIKKVKLFDVDSWTLGALAGSGIEVMIGIPNDQMERLSNSGQAEQWVKQNLTKHLHGGVDIRYISVGNEPFLASYENKYRSSTFPAMKSIQKAVEKAGVAEQVKVTSCLNADVLDSGSDKPSDGQFRSDIKDVMKEILQFLNDNNSPFFINIYPYLSLYLNPNFPEELAFFDAGRSFEDKGATYTNVFDASVDTLVWALKKEGYSDMKIVVGEVGWPTDGHKSANKDKARRFYHGFLKKLGNQQGSPLHPGVLDVYLFGLFDENLKNIEPGKFERHWGIFEYDGKPKFPVDFSGKGEDHKWPVGAKGVRYLEKQWCVLSEDVKDFSGPVYEALGYACANTDCTSLGYGCSCADLDIRGNVSYAFNQYFQARDQSVEACDFDGLAEIVTSDPSKGTCKFPIVIESAATSLKTRDAIIHILLLGFALFFVTFM* 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g2417 489 PANTHER GLUCAN ENDO-1,3-BETA-GLUCOSIDASE BG1-RELATED-RELATED 4 476 IPR044965 GO:0004553|GO:0005975
Amo20g2417 489 Gene3D Glycosidases 32 358 - -
Amo20g2417 489 Pfam Glycosyl hydrolases family 17 34 350 IPR000490 GO:0004553|GO:0005975
Amo20g2417 489 Gene3D - 368 469 - -
Amo20g2417 489 SMART X8_cls 372 456 IPR012946 -
Amo20g2417 489 ProSitePatterns Glycosyl hydrolases family 17 signature. 265 278 IPR000490 GO:0004553|GO:0005975
Amo20g2417 489 PANTHER GLUCAN ENDO-1,3-BETA-GLUCOSIDASE-LIKE PROTEIN 4 476 - -
Amo20g2417 489 Pfam X8 domain 372 442 IPR012946 -
Amo20g2417 489 SUPERFAMILY (Trans)glycosidases 34 350 IPR017853 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g2417 Amo-Chr20 112785757 112787667 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g2417 35 468 Miscellaneous Gene Families AT5G64790 53.547 4.38e-171 489
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g2417 - - gmx:100794658 639.032
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo06g3023 06 96717762 96721225 Amo20g2417 20 112785757 112787667 PCT