Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo08g2018 ATGGAAGGTGAAAAATCTAGTATCTTTTTTGTTCTGTTGTTCTTGAATGTGATATGGTTAGTGGGTTCAGTGAGTGGAATTGGTGTTAACTGGGGAATACAATCAACACACCCTTTGCCACCATCCACAGTTGTGAAATTGCTGAAAGACAATGGAATTCAGAGGGTTAAGCTATTTGATGCTGATCCTGATATCTTGGATGCTATGAAGAAATCTGGGATTCAAGTTATGGTTGGAATCCCAAATGACATGCTTTATACACTTGCTAATAGTGTTCAAGCTGCTGAAAAATGGGTTTCAAAGAACGTTTCTGCGCATCTCTCTTCTGGAGGAGTTGACATCAGGTATGTTGCAGTGGGAAATGAACCATTCTTGTCAACATACAACGGTACTTATGAATCCACAACGCTTCCGGCTCTGCAAAACATTCAAGCAGCTCTGACGAAATCTGGTCTGAGCAACCGTGTCAAAGTGACTGTCCCTCTAAATGCAGATGTATACCAGAGCTCATCCGAGAAGCCTTCGGACGGAGATTTCCGGCCGGACATCCATGATCTCATGCTGCAGATTGTCAAGTTCTTGAGCCAAAATGGTGCACCATTTACTGTGAACATCTACCCTTTCATTAGCCTCTACTCTGACCCAAATTTCCCGGTAGACTATGCCTTCTTCAACGGCTACCAACCTGCCATCAATGACAATGGAAAAAACTATGACAATGTCTTTGATGCAAACCATGACACACTAGTTTGGGCCCTGCAGAAGAATGGTTTCACAAATGTCCCTATAATCATAGGCGAAATTGGTTGGCCTACTGATGGAGACAAGAATGCTAATCTTCAACTTGCTCAACGGTTCAACCAAGGCTTCGTGTCGCGCTACTATGTATCTCAAAAGGGTACTCCAATGAGGCCTGGTCCGGTCGATGCTTACTTGTTTAGCCTCATAGATGAAGATAACAAGAGCATTCGACCGGGCAACTTCGAGCGCCATTGGGGAATATTCTACTTTGATGGACAACCTAAGTACCAACTTAGCCTTGGACAATCAAAGGGGTTGGTAGCAGCTAGTGGTGTTGATTATCTGGCTAAGAAATGGTGTGTGTTGAAGCCTTCTGCAAATCTTAATGATGACCAAGTTGCACCAAGTGTGGCATATGCTTGTGAAAATGCTGATTGTACTAGTCTTGGCTATGGAACTTCATGTGGTAACTTAGATGTTAAAGGTAACATATCTTATGCTTTCAATAGCTATTACCAGATTCATGATCAATTGGACAGTGCATGCAAATTCCCTGGCCTTTCTATGATCACTGATAAGGACCCTTCTGTTGGAACTTGCAAGTTTAGGATCATGATTCAGACAGATTCTGCTGAATGGATAGATGGGAGAACTTGGTTTCTAAGAAAAGTGTTCTTTGTGTTATTGTTTTATATTATTACTATTATTATGTAA 1455 0.4186 MEGEKSSIFFVLLFLNVIWLVGSVSGIGVNWGIQSTHPLPPSTVVKLLKDNGIQRVKLFDADPDILDAMKKSGIQVMVGIPNDMLYTLANSVQAAEKWVSKNVSAHLSSGGVDIRYVAVGNEPFLSTYNGTYESTTLPALQNIQAALTKSGLSNRVKVTVPLNADVYQSSSEKPSDGDFRPDIHDLMLQIVKFLSQNGAPFTVNIYPFISLYSDPNFPVDYAFFNGYQPAINDNGKNYDNVFDANHDTLVWALQKNGFTNVPIIIGEIGWPTDGDKNANLQLAQRFNQGFVSRYYVSQKGTPMRPGPVDAYLFSLIDEDNKSIRPGNFERHWGIFYFDGQPKYQLSLGQSKGLVAASGVDYLAKKWCVLKPSANLNDDQVAPSVAYACENADCTSLGYGTSCGNLDVKGNISYAFNSYYQIHDQLDSACKFPGLSMITDKDPSVGTCKFRIMIQTDSAEWIDGRTWFLRKVFFVLLFYIITIIM* 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo08g2018 484 Pfam Glycosyl hydrolases family 17 27 346 IPR000490 GO:0004553|GO:0005975
Amo08g2018 484 PANTHER GLUCAN ENDO-1,3-BETA-GLUCOSIDASE 5 19 458 - -
Amo08g2018 484 SMART X8_cls 365 449 IPR012946 -
Amo08g2018 484 Gene3D Glycosidases 26 353 - -
Amo08g2018 484 PANTHER GLUCAN ENDO-1,3-BETA-GLUCOSIDASE BG1-RELATED-RELATED 19 458 IPR044965 GO:0004553|GO:0005975
Amo08g2018 484 SUPERFAMILY (Trans)glycosidases 27 346 IPR017853 -
Amo08g2018 484 Gene3D - 361 459 - -
Amo08g2018 484 ProSitePatterns Glycosyl hydrolases family 17 signature. 261 274 IPR000490 GO:0004553|GO:0005975
Amo08g2018 484 Pfam X8 domain 365 435 IPR012946 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo08g2018 Amo-Chr8 32555407 32558621 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo08g2018 7 484 Glycoside Hydrolase AT4G31140 67.992 0.0 691
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo08g2018 K19893 - gmx:100796552 822.002
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo08g2018 08 32555407 32558621 Amo06g3023 06 96717762 96721225 PCT