Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo06g2820 ATGTCCTTCCTTTCATGCTTCCACCTCTCAAAAACTTCCGACGACTGTCCGCCGCATCCACCGCTGCGGCAGCAACTCTTCTTGACAACGCAAACCAGCTACACATACCAAACCGCCGCCGGCACCGTCACCGTGACATGGTCTCAGTCCATCTTCGGCCGGTCCCTCCAGCTCCATCTCCACAACCACCACCCTTTCAACCCTCCCACCTTCAACCTCCGCATCAACGCTTTCCCTTTCTCCTTCCGCAACAAGAAGCGCGGGCACAAATCTCTCTCTCACAACATAAGAATCTTCTGGAACCTCTCCAAAGCCAGGTTCGGTAACCGTCCGGAGCCTGAGTCTAATTACCTCCTTGCCCTCACGCTAGACGACTCCATCGCACTCCTCGTCGGAGATGTACCGCTCAAAGATGCATGCGCCACGTGCAAGGCACGTGATCCCGAGAACCGCCAGGTACTCGTCACCAGGAAAGAGTACGTCGACGTCGACGCCAACGGTGTCTCCAACAGAGTCTACTCCACGTCGGCAACGATCGCCGGAAGAACGAGAGAGTTGGAGGTTGAATATCACGGCGGCGGCGGCGACGATAGCGAAAACTCGAGGCTTCTGTTTAGTTTCGACGGAGAGAAGGTTTTGGAAGTGAAGAGGTTGAGGTGGAAGTTTAGGGGGAACGAGAGAGTGGAAATTGGTGAAGGTGGTCACGTGCAAATCACGTGGGACGTTCATAACTGGCTATTCAAAAAGGAGGAATACCAACACTACTACAACAACTATAACAACTCCTACAATAATAAGAATAAGAATTATTATTATAACAATCTGGGTAAAAGTGATGATGGTCACGCCGTGTTTATGTTCAAGTTTGAGGAGGACGAGGATTTCGGGGAGACTTATTGGAACGATTCGGAATGCGGGAAAACTGGCAAGAGTTTATTATTGTCATCGTCGTCGTTTTCGTTGTCGTCTTCGCTGGGATCATTCGGCGGAAGCTCCTCCGTCATGGAGTGGTCCAATCTAGAAGAGAGCGAGTTGATTGGTCCCGTTGGATTAACTCTTCTTGTTCATGCTTGGAGAATTGGAATTTGA 1089 0.5078 MSFLSCFHLSKTSDDCPPHPPLRQQLFLTTQTSYTYQTAAGTVTVTWSQSIFGRSLQLHLHNHHPFNPPTFNLRINAFPFSFRNKKRGHKSLSHNIRIFWNLSKARFGNRPEPESNYLLALTLDDSIALLVGDVPLKDACATCKARDPENRQVLVTRKEYVDVDANGVSNRVYSTSATIAGRTRELEVEYHGGGGDDSENSRLLFSFDGEKVLEVKRLRWKFRGNERVEIGEGGHVQITWDVHNWLFKKEEYQHYYNNYNNSYNNKNKNYYYNNLGKSDDGHAVFMFKFEEDEDFGETYWNDSECGKTGKSLLLSSSSFSLSSSLGSFGGSSSVMEWSNLEESELIGPVGLTLLVHAWRIGI* 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo06g2820 362 PANTHER OS08G0422401 PROTEIN 2 359 - -
Amo06g2820 362 Pfam Plant protein of unknown function (DUF868) 35 359 IPR008586 -
Amo06g2820 362 PANTHER EXPRESSED PROTEIN 2 359 IPR008586 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo06g2820 Amo-Chr6 93421172 93423450 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo06g2820 43 339 EF-hand Containing Proteins AT5G28150 27.759 1.30e-28 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo06g2820 - - aip:107605403 664.07
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g3695 16 148034385 148035901 Amo06g2820 06 93421172 93423450 hybridization
Amo06g2820 06 93421172 93423450 Amo10g2183 10 76711009 76712037 PCT
Amo06g2820 06 93421172 93423450 Amo20g2645 20 122810562 122812855 PCT
Amo10g2183 10 76711009 76712037 Amo06g2820 06 93421172 93423450 PCT
Amo20g2645 20 122810562 122812855 Amo06g2820 06 93421172 93423450 PCT