Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo06g0272 ACTCCCATCAATCTCATCACATTCTCAAACATCAATTATATTATCTCTTCTGCTTCATCATTTCCAGGGAACCCTAACAAAGAAGCAGCAACACCAACAAATTCAACAAAAGAAGAAATTGAAACTCTTGGATCTGCAAACCAAAGCCTGAGATCGAGACAGGTTCTAATCTTCCATGGATTCAATTCAAGAATTTATGGACACATCTCATCGTCATCGCCGGCGGCTTCAACGACGAGCAGCAGCCGCTACGAGAACCAGAAGCGCCGTGACTGGAACACTTTCGGACAGTACCTGAAGAATCACCGTCCTCCTTTGTCCCTCTCTAGGTGCAGCGGTGCACATGTTCTTGAATTTCTCCGGTACCTGGACCAATTTGGGAAGACGAAGGTGCACACGCCGATCTGTCCATTCTACGGGCACCCGAACCCGCCGGCGCCATGTCCGTGCCCTCTGAGGCAAGCCTGGGGGAGCCTGGACGCCCTCATCGGCCGGCTCCGTGCGGCTTTCGAAGAGAACGGAGGGAAGCCTGAGGCGAATCCGTTCGGAGCACGCGCCGTGAGGCTCTACCTCCGCGAGGTTCGTGATCTGCAGTCCAAAGCAAGAGGTATCAGCTATGAGAAGAAGAAACGCAAGCGTGCTAGCTGCAATGTGAAGCAAAAGTGTAAAGAGGATCTGGGATCTTCATTTTGA 693 0.5152 TPINLITFSNINYIISSASSFPGNPNKEAATPTNSTKEEIETLGSANQSLRSRQVLIFHGFNSRIYGHISSSSPAASTTSSSRYENQKRRDWNTFGQYLKNHRPPLSLSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCPLRQAWGSLDALIGRLRAAFEENGGKPEANPFGARAVRLYLREVRDLQSKARGISYEKKKRKRASCNVKQKCKEDLGSSF* 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo06g0272 230 Pfam ALOG domain 75 196 IPR006936 -
Amo06g0272 230 PANTHER G1-LIKE PROTEIN 69 221 - -
Amo06g0272 230 ProSiteProfiles ALOG domain profile. 83 210 IPR006936 -
Amo06g0272 230 PANTHER PROTEIN G1-LIKE2 69 221 IPR040222 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo06g0272 Amo-Chr6 3671382 3673599 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo06g0272 - - aip:107625036 286.574
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g1457 16 26394292 26396514 Amo06g0272 06 3671382 3673599 hybridization
Amo12g0733 12 15358646 15360679 Amo06g0272 06 3671382 3673599 PCT
Amo09g1392 09 44037812 44039029 Amo06g0272 06 3671382 3673599 PCT