Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g3171 ATGGCTTGTTGGTCTGCAGAAAATGCCACTAAGGCCTATCTCAACACTTTGAAAATGGGACAAAAAGCGAAAGAACCGGCTGTGGCGGAGTTTATATCGGCCTTGGCCGCCGGGAACAATGCGCAGCTAATGGTGGTGGCTTGTGCCGGGGCGGCCGACTCAGCCACCTTACTAGCCCTAGTAGAGGCGGCAAATCAAACCGGGGGACACGTGATTTGCATTGTTCCAACTCATGAAGACTTAAATGGGTCAAAGTATGTTGTTGGAAGAACAGCATCAAATGAAGTCGAATTCATGGTTGGAGAGGCTGAGATCCTTCTCCTTAACCAGTACGCCGCCGCCGACTTCGTCCTCATCGATTGCAAGCTCAAGAACCATGAAGAGATTCTGAAGGCAGTTCAAGTTGGTGGAAGGAAGCAAAATGGGACATTGGTGGTTGGTTACAATGCATTTGTGTGTAAAGGGTCTAGGTGGTCCTCTTCATCATCTTGTGGTTCAAGAACTCAGTTACTTCCAATTGGAGAAGGATTATTTGTAACTAGGTTTGGATCAAGCACAGTTCATACTCCAAAACATGGAATCAACAAGATCAAGAGTCGTTGGATTGTTAAGGTTGATAAATGCACTGGGGAAGAACATGTTTTCAGGGTTAGGTTTCCACAAGGAAAAGTTATTCAAGCTTAA 684 0.4591 MACWSAENATKAYLNTLKMGQKAKEPAVAEFISALAAGNNAQLMVVACAGAADSATLLALVEAANQTGGHVICIVPTHEDLNGSKYVVGRTASNEVEFMVGEAEILLLNQYAAADFVLIDCKLKNHEEILKAVQVGGRKQNGTLVVGYNAFVCKGSRWSSSSSCGSRTQLLPIGEGLFVTRFGSSTVHTPKHGINKIKSRWIVKVDKCTGEEHVFRVRFPQGKVIQA* 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g3171 227 Gene3D Vaccinia Virus protein VP39 5 181 IPR029063 -
Amo05g3171 227 PANTHER DUF1442 FAMILY PROTEIN 1 227 IPR009902 -
Amo05g3171 227 PANTHER BNAA09G06020D PROTEIN 1 227 - -
Amo05g3171 227 Pfam Protein of unknown function (DUF1442) 3 216 IPR009902 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g3171 Amo-Chr5 93179085 93180008 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g3171 - - gmx:100775961 317.005
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo05g3171 05 93179085 93180008 Amo19g2367 19 108404363 108405207 PCT
Amo05g3171 05 93179085 93180008 Amo09g1956 09 82226842 82228066 PCT
Amo19g2367 19 108404363 108405207 Amo05g3171 05 93179085 93180008 PCT
Amo09g1956 09 82226842 82228066 Amo05g3171 05 93179085 93180008 PCT