Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo04g2943 ATGTGGAAGCTCGCACGATTCGCCGCAACAAGTTTGGCCCGATCGCGGCGGTTCTCGACGGCGATTCCAGGTCCGTGCATGGTTCACAAGCGCGGTGCAGATATCCTGCACGATCCATGGTTCAACAAGGATACTGGGTTTCCCTTGACTGAAAGGGATCGGTTGGGGCTTCGGGGTCTCCTTCCTCCTCGTGTCATATCATTCGAGCACCAATATGAACGTTTCATGAATTCATACAGGTCCTTGGAGAAGAACACCCGGGGCCAATCAGATAAATTTATTTCCTTAGCGAAATGGAGAATCTTAAATAGACTGCATGACAGGAATGAGACTCTGTACTACAGAGTTCTTATTGATAATATTAAAGAGTTTGCTCCAATAATCTATACTCCTACAGTTGGATTAGTGTGTCAAAATTATTCAGGGTTATATAGGCGCCCACGTGGAATGTATTTTAGTGCCAAAGATAAAGGAGAGATGATGTCGATGATCTATAACTGGCCTGCAAATCAGGTAGATATGATTGTCTTGACAGATGGTAGTCGTATTCTTGGCTTAGGTGACCTTGGAGTTCAAGGCATTGGAATACCAATAGGAAAACTTGATATGTATGTTGCTGCTGCTGGTATGAACCCACAGAGAATACTTCCAGTTATGTTAGATGTTGGCACAAACAATCAAAAGCTACTTGAAGATCCACTTTATTTGGGAGTTCGACAACCTAGGTTGGAAGGTGAAGAGTACCTAGCAGTTGTGGATGAATTCATGGAAGCTGTCCATGCTCGTTGGCCTAAGGCTATTGTGCAGTTTGAAGATTTCCAAATGAAGTGGGCTTTTGAAACTTTGTACCGATATCGCAAAAAGTTTTGTATGTTTAATGATGATATTCAGGGCACTGCTGGTGTTGCACTTGCCGGATTACTGGGAACTGTAAGAGCCCAAGGTCGACCATTGTCTGATTTTGTGAATCAAAAGATAGTTGTGGTTGGAGCTGGGAGTGCAGGTCTTGGTGTTCTTAAGATGGCTGTCCAGGCAGTTTCAAGGATGTCCGGGTGCAGTGAAACAGCTGCCAAAAGTCAATTCTATTTAATTGATAAGAATGGTCTTGTCACAACAGAAAGGAGCAATCTAGATCCGGCTGCAGTTCCCTTTGCTAAACACCAAAGTGACCTAGAAGGTCTTGCAGAGGGTGCTAGTATAATTGAAGTGGTTAAGAAGATTAAGCCACATGTGCTTGTTGGATTGTCTGGGGTTGGTGGTATTTTCAATGAGGAGGTGCTTAAGGCAATGAGAGAATCTGTTTCGACAAAACCTGCTATCTTTGCAATGTCTAATCCCACAATGAATGCTGAATGCACTGCTACTGATGCTTTTAACCATGCGGGAGAAAATATAGTGTTTGCCAGTGGAAGCCCTTTCGAAAATGTAAATCTTGGTGATGGAAAATTTGGCCACGTAAATCAAGCCAACAACATGTACCTGTTCCCAGGGATTGGTTTGGGAACACTTCTGTCAGGTGCTCGTCTCATAACAGATGGAATGTTGCAGGAAGCAGCTGAATGTCTTGCTTCATACATGACTGAGGAAGATATCCATAAAGGAATTTTGTATCCATCAATTGATTGTATACGGAACGTTACAGCAGAGGTTGGGGCTGCTGTTCTAAGAGCAGCAGTTGTAGAAGGGCTGGCTGAAGGACATGGTGATGTAGGATCAAAAGAACTTGCACACATGTCAAAAGAGGATACAGTAGGGTACGTTAGAGAAAACATGTGGTTCCCTGAGTATAGCCCCCTTGTTCATGAGAAGTAA 1812 0.436 MWKLARFAATSLARSRRFSTAIPGPCMVHKRGADILHDPWFNKDTGFPLTERDRLGLRGLLPPRVISFEHQYERFMNSYRSLEKNTRGQSDKFISLAKWRILNRLHDRNETLYYRVLIDNIKEFAPIIYTPTVGLVCQNYSGLYRRPRGMYFSAKDKGEMMSMIYNWPANQVDMIVLTDGSRILGLGDLGVQGIGIPIGKLDMYVAAAGMNPQRILPVMLDVGTNNQKLLEDPLYLGVRQPRLEGEEYLAVVDEFMEAVHARWPKAIVQFEDFQMKWAFETLYRYRKKFCMFNDDIQGTAGVALAGLLGTVRAQGRPLSDFVNQKIVVVGAGSAGLGVLKMAVQAVSRMSGCSETAAKSQFYLIDKNGLVTTERSNLDPAAVPFAKHQSDLEGLAEGASIIEVVKKIKPHVLVGLSGVGGIFNEEVLKAMRESVSTKPAIFAMSNPTMNAECTATDAFNHAGENIVFASGSPFENVNLGDGKFGHVNQANNMYLFPGIGLGTLLSGARLITDGMLQEAAECLASYMTEEDIHKGILYPSIDCIRNVTAEVGAAVLRAAVVEGLAEGHGDVGSKELAHMSKEDTVGYVRENMWFPEYSPLVHEK* 604
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo04g2943 603 CDD NAD_bind_1_malic_enz 296 594 - -
Amo04g2943 603 PANTHER MALIC ENZYME-RELATED 1 599 - -
Amo04g2943 603 Pfam Malic enzyme, N-terminal domain 106 286 IPR012301 GO:0004471
Amo04g2943 603 PIRSF ME 6 602 IPR001891 GO:0004470|GO:0004471
Amo04g2943 603 SMART malic_2 106 286 IPR012301 GO:0004471
Amo04g2943 603 PANTHER MALIC ENZYME 1 599 - -
Amo04g2943 603 Gene3D - 294 603 - -
Amo04g2943 603 SMART Malic_M_2 296 559 IPR012302 GO:0051287
Amo04g2943 603 Pfam Malic enzyme, NAD binding domain 296 558 IPR012302 GO:0051287
Amo04g2943 603 SUPERFAMILY Aminoacid dehydrogenase-like, N-terminal domain 17 295 IPR046346 -
Amo04g2943 603 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 296 600 IPR036291 -
Amo04g2943 603 ProSitePatterns Malic enzymes signature. 292 308 IPR015884 GO:0004471
Amo04g2943 603 Gene3D - 30 293 IPR037062 GO:0004471
Amo04g2943 603 PRINTS Malic enzyme signature 112 136 IPR001891 GO:0004470|GO:0004471
Amo04g2943 603 PRINTS Malic enzyme signature 172 201 IPR001891 GO:0004470|GO:0004471
Amo04g2943 603 PRINTS Malic enzyme signature 208 230 IPR001891 GO:0004470|GO:0004471
Amo04g2943 603 PRINTS Malic enzyme signature 267 285 IPR001891 GO:0004470|GO:0004471
Amo04g2943 603 PRINTS Malic enzyme signature 292 308 IPR001891 GO:0004470|GO:0004471
Amo04g2943 603 PRINTS Malic enzyme signature 326 342 IPR001891 GO:0004470|GO:0004471
Amo04g2943 603 PRINTS Malic enzyme signature 435 451 IPR001891 GO:0004470|GO:0004471
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo04g2943 Amo-Chr4 104864092 104871264 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo04g2943 K00028 - gmx:100806545 1065.45
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo14g3386 14 136368537 136376044 Amo04g2943 04 104864092 104871264 hybridization
Amo04g2943 04 104864092 104871264 Amo12g0467 12 7572542 7576276 PCT
Amo04g2943 04 104864092 104871264 Amo02g0620 02 8039555 8045874 PCT
Amo12g0467 12 7572542 7576276 Amo04g2943 04 104864092 104871264 PCT
Amo02g0620 02 8039555 8045874 Amo04g2943 04 104864092 104871264 PCT