Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo02g0620 ATGTGGAACCTGGCACGAGTCGCCGCCACCGCCGTTGCCAGATCGAGCCGGCGGTTATCGACGGCGATTCCCGGCCCTTTCATTGTTCACAAGCGCGGTGCTGATATCCTCCACGATCCTTGGTTCAACAAGGATACTGGGTTTCCTTTGACTGAACGGGACCGATTGGGGCTTAGGGGCCTCCTTCCTCCTCGTGTCATTTCATTTGAGCAGCAATATGATCGCTTCATGAATTCATACCGGTCTTTGGAGAAGAACACTCAGGGACAACCAGATAAAGTTGTTGCCCTAGCCAAATGGAGAATCTTGAACAGACTGCATGACAGGAACGAGACATTGTACTACAGAGTGCTTATTGATAATATTAAAGAGTTTGCCCCTATAATATATACTCCTACAGTTGGATTAGTTTGCCAAAATTATTCTGGGTTATTTAGACGTCCACGTGGAATGTATTTTAGTGCCAAAGATAAAGGAGAGATGATGTCGATGATCTATAACTGGCCAGCTCCTGAGGTAGATATGATTGTCTTGACAGACGGTAGTCGAATCCTTGGCTTAGGTGACCTTGGAGTTCAGGGCATTGGAATACCAATAGGAAAACTTGACATTTATGTTGCTGCTGCTGGTATCAGCCCGCAAAGAATACTTCCAGTTATGCTAGATGTTGGAACCAACAATCAAAAGCTACTTGAAGATCGTCTTTATTTAGGACTTCGACAACCAAGGTTGGAAGGTGAAGAGTATCTATCAATTGTGGATGAATTCATGGAAGCTGTTCATGCTCGATGGCCTAAGGCCATTGTGCAGTTTGAGGATTTCCAAATGAAGTGGGCTTTTGAAACTTTGGAACGATATCATAAAAGGTTTTGCATGTTTAATGATGATATACAGGGCACTGCTGGTGTTGCTCTTGCTGGAATATTGGGATCTGTAAGAGCCCAAGGTCGGCCATTGTCTGATTTTGTAAACCAAAAGATAGTTGTAGTTGGAGCTGGAAGTGCAGGGCTTGGTGTTCTGAAAATGGCCATCCAGGCAGTTTCAAAGATGGCAGGGTGCAGTGAAACAGCTGCCAAAAGTCAATTCTTTTTGATTGATAAAGATGGTCTTGTCACAACTGATAGGAATAATCTAGATCCAGCTGCAGCTCCATTTGCTAAAAACCCAAGAGACCTAGAAGGGCTCACTGAGGGTGCTAGTATAATTGAAGTGGTGAAGAAGGTTAGACCACATGTTCTCCTTGGTTTGTCTGGGGTTGGTGGCATTTTCAATGAGGAGGTGCTTAAGGCAATGAAAGAATCTGTTTCAACAAAACCTGCCATCTTTGCCATGTCTAACCCTACAATGAATGCTGAGTGCACTGCTATTGATGCTTTTAAGCATGCCGGAGGAGATATCGTATTTGGAAGTGGAAGCCCTTTCGAAAATGTAGATCTTGGTAATGGAAAAGTGGGTCATGTAAATCAAGCCAACAACATGTATCTGTTCCCAGGAATCGGTCTAGGATCACTTTTGTCAGGTGCTCGGCTAATAACAGATGGAATGTTGCAGGCTGCTGCTGAATGCCTTGCTTCATACATGTTAGAGGAAGATATCTCAAAAGGAATCTTGTATCCATCCATTGATAGCATTCGAAATGTAACAGCAGAGGTTGGTGCTGCTGTTCTTCGAGCAGCAGTTGAAGACAACTTGGCAGAAGGGCATGGTGATGTAGGGCCCAAGGAACTTGCAAAGATGTCAAAAGAGGAGACGGTGGAGTACGTCGCAAGAAATATGTGGTACCCTGTGTATTCTCCTCTTGTTCATGAAAAATAG 1815 0.4424 MWNLARVAATAVARSSRRLSTAIPGPFIVHKRGADILHDPWFNKDTGFPLTERDRLGLRGLLPPRVISFEQQYDRFMNSYRSLEKNTQGQPDKVVALAKWRILNRLHDRNETLYYRVLIDNIKEFAPIIYTPTVGLVCQNYSGLFRRPRGMYFSAKDKGEMMSMIYNWPAPEVDMIVLTDGSRILGLGDLGVQGIGIPIGKLDIYVAAAGISPQRILPVMLDVGTNNQKLLEDRLYLGLRQPRLEGEEYLSIVDEFMEAVHARWPKAIVQFEDFQMKWAFETLERYHKRFCMFNDDIQGTAGVALAGILGSVRAQGRPLSDFVNQKIVVVGAGSAGLGVLKMAIQAVSKMAGCSETAAKSQFFLIDKDGLVTTDRNNLDPAAAPFAKNPRDLEGLTEGASIIEVVKKVRPHVLLGLSGVGGIFNEEVLKAMKESVSTKPAIFAMSNPTMNAECTAIDAFKHAGGDIVFGSGSPFENVDLGNGKVGHVNQANNMYLFPGIGLGSLLSGARLITDGMLQAAAECLASYMLEEDISKGILYPSIDSIRNVTAEVGAAVLRAAVEDNLAEGHGDVGPKELAKMSKEETVEYVARNMWYPVYSPLVHEK* 605
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo02g0620 604 ProSitePatterns Malic enzymes signature. 293 309 IPR015884 GO:0004471
Amo02g0620 604 SUPERFAMILY Aminoacid dehydrogenase-like, N-terminal domain 18 296 IPR046346 -
Amo02g0620 604 Gene3D - 31 294 IPR037062 GO:0004471
Amo02g0620 604 CDD NAD_bind_1_malic_enz 297 595 - -
Amo02g0620 604 PANTHER MALIC ENZYME 1 600 - -
Amo02g0620 604 Pfam Malic enzyme, NAD binding domain 297 559 IPR012302 GO:0051287
Amo02g0620 604 PRINTS Malic enzyme signature 113 137 IPR001891 GO:0004470|GO:0004471
Amo02g0620 604 PRINTS Malic enzyme signature 173 202 IPR001891 GO:0004470|GO:0004471
Amo02g0620 604 PRINTS Malic enzyme signature 209 231 IPR001891 GO:0004470|GO:0004471
Amo02g0620 604 PRINTS Malic enzyme signature 268 286 IPR001891 GO:0004470|GO:0004471
Amo02g0620 604 PRINTS Malic enzyme signature 293 309 IPR001891 GO:0004470|GO:0004471
Amo02g0620 604 PRINTS Malic enzyme signature 327 343 IPR001891 GO:0004470|GO:0004471
Amo02g0620 604 PRINTS Malic enzyme signature 436 452 IPR001891 GO:0004470|GO:0004471
Amo02g0620 604 SMART Malic_M_2 297 560 IPR012302 GO:0051287
Amo02g0620 604 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 297 601 IPR036291 -
Amo02g0620 604 Pfam Malic enzyme, N-terminal domain 107 286 IPR012301 GO:0004471
Amo02g0620 604 Gene3D - 295 604 - -
Amo02g0620 604 PANTHER MALIC ENZYME-RELATED 1 600 - -
Amo02g0620 604 PIRSF ME 6 603 IPR001891 GO:0004470|GO:0004471
Amo02g0620 604 SMART malic_2 107 287 IPR012301 GO:0004471
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo02g0620 Amo-Chr2 8039555 8045874 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo02g0620 K00028 - gmx:100811081 1095.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo12g0467 12 7572542 7576276 Amo02g0620 02 8039555 8045874 hybridization
Amo14g3386 14 136368537 136376044 Amo02g0620 02 8039555 8045874 PCT
Amo04g2943 04 104864092 104871264 Amo02g0620 02 8039555 8045874 PCT
Amo02g0620 02 8039555 8045874 Amo14g3386 14 136368537 136376044 PCT
Amo02g0620 02 8039555 8045874 Amo04g2943 04 104864092 104871264 PCT