Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo04g2878 ATGAAGAGTTTTTGCTCAAAGGCACCCTTAATTTTCCTCATCACTTTTATAATTATCACAAATTGCTTGTTCTCCGAAGCACAAAAATGTCGCCCAAGCGGCCGAATCATAGGGAAGAAACCTCCTCCAGGACAGTGCAACCAAGAAGATGATTCAGATTGTTGCTTGCAAGGCAAGGTATACACAACCTATGAATGTTCGCCACAAGTGACAGCCCAAACAAAGGCCTACCTCACACTTAACAGCTTCCAGAAAGGTGGAGACGGCGGCGGCCCTTCAGAGTGTGACAACAAGTACCACCCGGACGACACTCCGGTAGTAGCCCTGTCAACAGGATGGTTCAACAACAAGAGCAGGTGTCTAAACAACATCAGGATCAGCGCGAATGGGAGGAGCGTGGTGGCGATGGTGGTGGATGAGTGTGACTCAAGAAAGGGGTGTGATGAGGACCATGATTACCAACCTCCTTGTAAGAACAACATTGTTGATGCCTCTAAGGCTGTTTGGGAAGCATTGGGTGTACCACATGATCAATGGGGTGGCATGGACATTACTTGGTCTGATGCTTGA 570 0.4807 MKSFCSKAPLIFLITFIIITNCLFSEAQKCRPSGRIIGKKPPPGQCNQEDDSDCCLQGKVYTTYECSPQVTAQTKAYLTLNSFQKGGDGGGPSECDNKYHPDDTPVVALSTGWFNNKSRCLNNIRISANGRSVVAMVVDECDSRKGCDEDHDYQPPCKNNIVDASKAVWEALGVPHDQWGGMDITWSDA* 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo04g2878 189 PANTHER RIPENING-RELATED PROTEIN 2-RELATED 5 189 IPR039271 -
Amo04g2878 189 PANTHER LIPID TRANSFER PROTEIN 5 189 - -
Amo04g2878 189 Gene3D - 76 188 IPR036908 -
Amo04g2878 189 SUPERFAMILY Barwin-like endoglucanases 68 187 IPR036908 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo04g2878 Amo-Chr4 103938219 103938976 Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo04g2878 - - cam:101500410 328.946
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo14g3322 14 134958328 134958897 Amo04g2878 04 103938219 103938976 hybridization
Amo04g2878 04 103938219 103938976 Amo02g0177 02 2010503 2011081 PCT
Amo02g0177 02 2010503 2011081 Amo04g2878 04 103938219 103938976 PCT