Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo04g2856 ATGACCAAGGAAGAACAAGTGTTTGAGTTCCTCGGGTGTGTTCCTCTGCTACAGAGACTTCCTAGCTCCTCCGTCAGGAAGATTTCTCAGCTTGTGATTGTTAAGCACTATGAGCCCGGAGATTATGTTGTTCGTGAGGGGGAACCTGCAGATGGGCTTTACTTCATATTTGAAGGAGAGGCTGAAGTTATTGGATCGGATAGAACTGATGATGAAAATCATCCAGAATTTCTATTAAAAAGATATGACTATTTTGGTTATGGTCTAGCAAATGCTGTTCATCAAGCTGATGTCATAGCTCTGACTAAGTTGTCATGTTTATTGCTGCTTCATGAGCACTCAGCACTGCTACAGCCAAATTCTATTTGGAGTGAAGAAAAACCTGTTGATACATGCTCGCTAGTGGAGCATATATTGCATTTGGAGCCTATAGAGGTAGATATCTTCCGAGGAATCACCCCTCCAAAGGCTCCAAAATTCGGGAAGGTGTTTGGTGGACAGACAGTTGGACAGGCACTGGCTGCAGCATCAAAATCTGTTGATTGTCTTAAAGTTGTTCATAGCTTGCATGCCTATTTTCTTCTTGTTGGGGATTTTAACATGCCAATTATATATCAAGTTCATAGACTCCGTGAAGGGAAGAGCTTTGCCACAAGGAGAGTGGATGCAATTCAAAAGGGAAATATCATTTTCACATTGATGGCTTCATTTCAAAAAGAGGAAATTGGGTTTGAACACCAGGAAGTGACTATGCCATCTGTCCCTAATCCAGATGAGGCAAGTACCAAGCTTACACTTCTTTCAATGGAAGAGTTACGGGAACAACGTCTTACTGACCCACGTCTCCCAAGAACTTACCGTAACAAGGTTGCTACATCCGAGTTCATTCCCTGGCCCATAGAGATAAGGTTCTGTGAGCCAAAAACTAAAACAACTCAGACCAAATCTCCTCCCAGCTTGAGATACTGGTTTAGAGCAAAGGGGAAACTTTCAGATGATCAGGCCTTGCATAGGTGTGTGGTGGCATATGCTTCTGATCTGATATTTCTTCAAGTTAGCTTAAACCCTCATCGTCGAAAGGGCTTCAAGGCCCGGGCTGTTAGCCTAGACCACTCGATGTGGTTTCATCGCCCTCTAAGAGCTGATGACTGGGTTCTATTTGTGATCTTTTCTCCTAGTACCTCCAATGCGCGTGGCTATGTCTCAGGCCAAATGTTCAATCAGAAGGGAGAACACCTTGTATCATTGATTCAAGAAGGTCTAATGAGGAAAGTTAATACTCCAAATTCAGCCATCAAATCTAAGTTGTGA 1311 0.431 MTKEEQVFEFLGCVPLLQRLPSSSVRKISQLVIVKHYEPGDYVVREGEPADGLYFIFEGEAEVIGSDRTDDENHPEFLLKRYDYFGYGLANAVHQADVIALTKLSCLLLLHEHSALLQPNSIWSEEKPVDTCSLVEHILHLEPIEVDIFRGITPPKAPKFGKVFGGQTVGQALAAASKSVDCLKVVHSLHAYFLLVGDFNMPIIYQVHRLREGKSFATRRVDAIQKGNIIFTLMASFQKEEIGFEHQEVTMPSVPNPDEASTKLTLLSMEELREQRLTDPRLPRTYRNKVATSEFIPWPIEIRFCEPKTKTTQTKSPPSLRYWFRAKGKLSDDQALHRCVVAYASDLIFLQVSLNPHRRKGFKARAVSLDHSMWFHRPLRADDWVLFVIFSPSTSNARGYVSGQMFNQKGEHLVSLIQEGLMRKVNTPNSAIKSKL* 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo04g2856 436 SMART cnmp_10 16 135 IPR000595 -
Amo04g2856 436 ProSiteProfiles cAMP/cGMP binding motif profile. 16 86 IPR000595 -
Amo04g2856 436 Pfam Cyclic nucleotide-binding domain 35 109 IPR000595 -
Amo04g2856 436 CDD Thioesterase_II_repeat2 147 239 - -
Amo04g2856 436 CDD CAP_ED 16 100 IPR000595 -
Amo04g2856 436 PANTHER ACYL-COA THIOESTERASE 52 436 - -
Amo04g2856 436 SUPERFAMILY Thioesterase/thiol ester dehydrase-isomerase 249 424 IPR029069 -
Amo04g2856 436 Gene3D - 130 425 IPR042171 -
Amo04g2856 436 CDD Thioesterase_II_repeat1 320 422 - -
Amo04g2856 436 ProSitePatterns Cyclic nucleotide-binding domain signature 1. 43 59 IPR018488 -
Amo04g2856 436 Pfam Thioesterase-like superfamily 154 422 - -
Amo04g2856 436 Gene3D Jelly Rolls 1 123 IPR014710 -
Amo04g2856 436 SUPERFAMILY Thioesterase/thiol ester dehydrase-isomerase 134 241 IPR029069 -
Amo04g2856 436 SUPERFAMILY cAMP-binding domain-like 6 109 IPR018490 -
Amo04g2856 436 PANTHER ACYL-COA THIOESTERASE 52 436 IPR003703 GO:0006637|GO:0047617
Amo04g2856 436 TIGRFAM tesB: acyl-CoA thioesterase II 139 423 IPR003703 GO:0006637|GO:0047617
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo04g2856 Amo-Chr4 103697725 103703930 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo04g2856 5 436 Acyl Lipid Metabolism Gene Families AT1G01710 67.824 0.0 618
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo04g2856 K01068 - gmx:100813197 707.212
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo14g3341 14 135538883 135545131 Amo04g2856 04 103697725 103703930 hybridization
Amo04g2856 04 103697725 103703930 Amo02g0162 02 1928667 1932397 PCT
Amo02g0162 02 1928667 1932397 Amo04g2856 04 103697725 103703930 PCT