Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo04g1375 ATGGATAGTACTCGCACCCAACACCACCATCAGCATCCAAAGAAGAAGAAGAAGCACTGTGCCCCTTTGCTTACTCTTACAACAACGTCCACTAATCCAAACAACCCTTTCTCCATTCTTCTCTTCTATTTCGCCAAGTCCCTCCGAGCCTTGTGCTTCAACAGGATTCACTGCTGCACTCATGCTTTTGTCATAACCAACACTCTCATCTATGCTTCTTCTTCAATGGAGCCTGTGACCACCAATGAAGCTTCTCAGAAGGGAAACAAAGAGAGCTTTGCTCATTTGATTGAAGACACTGATAATAAGGCTCGTGAGAGCACAAGCACACCCTCTTCTTCTTCTTCTTCTTTAAGCTCAGAGTTCCTTTCATCTTCGACCAATGCCCATGATGTAGAAGAACAAGAAAAGAGTCCAAGTAGCACTGAGGAATCTTCATCTTCTTCGGTACCTTCAATGGGGTGGCCGGTTAAGGATATTGCTGCATTGAACTTGGAGAATCAAGATGGTAAGAACAAGAAGCGCTTGGGGAATGGGGAATTTGAGAAACAAGAATCAGTATCAGAGATTGAGATGATGAAGGAAAGGTTTGCAAAATTGTTACTTGGAGAAGATATGTCAGGTTGTGGCAATGGAGTCCCTACAGCATTGGCTATATCAAATGCCATAACTAATCTTTGTGCTACCTTGTTCGGGCAACTTTGGAGGCTAGAACCCCTGCGTCCCGAGAAGAAAGCAATGTGGCGAAGAGAGATGGAATGGCTTCTATCTGTTAGTGATCACATAGTTGAGCTGATTCCTACTTGGCAAACCTTTGCAGATGGAAACAAACTTGAGGTCATGACTTGTCGACCGCGCTCAGATCTTTATGTCAATCTTCCTGCCCTGCGTAAATTAGATAACATGCTTCTTGAAATTCTTGACAGTTTTGTCAACACAGAGTTTTGGTATGTAGACCAAGGCGTTCTATCCCCAGATGCAGACGGTGTATCTTCTTTTCGACAAGCCCTTCAGCGACAGGAGGAGAAATGGTGGCTTCCCGTGCCGAGAGTCCCTCCTTGTGGCCTTAATGATAATTCAAGGAAGCAGCTGCAGCACAAGCGTGATTGCTCGAACCAAATACTGAAAGCTGCAATGGCCATTAATAGCATTACTTTAGCCGAAATGGACATCCCTGAGTCTTATTTGGAAACTCTTCCAAAGAATGCTAGAGTCAGCTTGGGTGATGTGATTTATCGTTACATCACCTCAGATCATTTTTCTCCCGAGTGTTTGCTGGCATGCCTTGATTTAACTTCTGAGCATCAAGCCATAGAGATCGCGAACCGAGCGGAGGCTTCCATGTACATTTGGCGAAAAAGGATCAACACAAAGCCTTCCAATAACATCACTACCAGTGGCAGAACTAGTTCAAGAACATCATGGGAAATGGTCAAGGATCTGATGGTTGATGGAGACAAAAGGGAATTGTTCTCAGAGAGAGCAGAAAGCCTTCTGCTTTCTCTAAAGCAACGCTTCCCAGGCCTCCCTCAAACAGCCTTAGATATGAGCAAAATCCAATACAACAAGGATGTTGGCAAAGCCATTCTGGAGAGCTACTCTAGAGTGCTGGAGAGCTTGGCATTTAACATGGTAGCACGCATCGACGACGTGCTCTACGTAGATGACTTGACAAAACACTCTGGACAGTTCACATCTCACACAAAAGTTGGTGTAATTACTCACAAGAATGTTTCAGTGCCATGCTCAATGCCTGTCCCAGGCACCCCATACAAATCAGCCTTCGGCTCGCCAAGCCTCTCTCCAGCGCAAGGGATCAGTTCCGTAAGGGGAGGGAAATCGCCACTCCTTCCCAGCAGCAGCAGCAGCAATACCAACAGTCCTCATAGAAGAGTAGGGGTGAAGAAATCTTTGACTGATTTTCTTAGCATTGACACAAAAGGAAAAGCGTACCAGAGTTCAAATGAGAAAGTAGCAAGCGATGAAGTGGCAGCATTTGAAACAGATGTGGAGTCAAGTGATTTCACTGAAGAAGCAGTTAGCCCAAATACGCTGCAGAAGGCATGGTTAGAGTGA 2076 0.4523 MDSTRTQHHHQHPKKKKKHCAPLLTLTTTSTNPNNPFSILLFYFAKSLRALCFNRIHCCTHAFVITNTLIYASSSMEPVTTNEASQKGNKESFAHLIEDTDNKARESTSTPSSSSSSLSSEFLSSSTNAHDVEEQEKSPSSTEESSSSSVPSMGWPVKDIAALNLENQDGKNKKRLGNGEFEKQESVSEIEMMKERFAKLLLGEDMSGCGNGVPTALAISNAITNLCATLFGQLWRLEPLRPEKKAMWRREMEWLLSVSDHIVELIPTWQTFADGNKLEVMTCRPRSDLYVNLPALRKLDNMLLEILDSFVNTEFWYVDQGVLSPDADGVSSFRQALQRQEEKWWLPVPRVPPCGLNDNSRKQLQHKRDCSNQILKAAMAINSITLAEMDIPESYLETLPKNARVSLGDVIYRYITSDHFSPECLLACLDLTSEHQAIEIANRAEASMYIWRKRINTKPSNNITTSGRTSSRTSWEMVKDLMVDGDKRELFSERAESLLLSLKQRFPGLPQTALDMSKIQYNKDVGKAILESYSRVLESLAFNMVARIDDVLYVDDLTKHSGQFTSHTKVGVITHKNVSVPCSMPVPGTPYKSAFGSPSLSPAQGISSVRGGKSPLLPSSSSSNTNSPHRRVGVKKSLTDFLSIDTKGKAYQSSNEKVASDEVAAFETDVESSDFTEEAVSPNTLQKAWLE* 692
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo04g1375 691 MobiDBLite consensus disorder prediction 669 691 - -
Amo04g1375 691 Gene3D PRONE domain, subdomain 1 181 421 - -
Amo04g1375 691 Gene3D PRONE domain, subdomain 1 422 564 - -
Amo04g1375 691 PANTHER ROP GUANINE NUCLEOTIDE EXCHANGE FACTOR 7 137 655 - -
Amo04g1375 691 MobiDBLite consensus disorder prediction 602 632 - -
Amo04g1375 691 ProSiteProfiles PRONE domain profile. 180 565 IPR005512 GO:0005085
Amo04g1375 691 MobiDBLite consensus disorder prediction 602 633 - -
Amo04g1375 691 MobiDBLite consensus disorder prediction 1 22 - -
Amo04g1375 691 MobiDBLite consensus disorder prediction 106 129 - -
Amo04g1375 691 MobiDBLite consensus disorder prediction 101 154 - -
Amo04g1375 691 PANTHER ROP GUANINE NUCLEOTIDE EXCHANGE FACTOR 1 137 655 IPR038937 GO:0005085
Amo04g1375 691 Pfam PRONE (Plant-specific Rop nucleotide exchanger) 188 559 IPR005512 GO:0005085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo04g1375 Amo-Chr4 65662192 65665552 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo04g1375 - - gmx:100800673 885.56
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo14g2486 14 102645275 102648390 Amo04g1375 04 65662192 65665552 hybridization
Amo04g1375 04 65662192 65665552 Amo12g2104 12 98539687 98543663 PCT