Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo04g0387 TTAATTAAACAAACAAGTGCATGCATAAGTGGTTTTTTGCTTACGAAAACACCTAATATAAAATTTTTCAAATTTTATTTATCTTTATTAAAATTAAAGTTTAATATAAACTTAATTATTACTAAATATCTAAACTTATTATTACATTATGGTTTTTGGCGGGGCAATGTACCAGCTTTGCTCATGGTTATGCCATATACATCCATACAGTTCACAGTTTTGCACAAGTTAAAATCTTTTGCCTCTGGTTCTTCCAAATCAGAGAATCACATTAATTTGAGCCCTTATCTATCCTATGTGAGTGGGGCATTAGCTGGGTGTACAGCTACTGTAGGATCATATCCTTTTGATCTCCTTCGAACCATATTAGCTTCTCAAGGTGAACCGAAGGTTTATCCAAACATGAGGTCAGCATTCGTTGACATTGTTAAGACTCGTGGTTTCTCTGGCTTGTATGCCGGACTGTCACCAACGCTAGTTGAGATTATACCTTATGCAGGCCTACAATTTGGTACTTACGATACGTTTAAACGTTGGGCTATGGCATGGAACCACACTCAATACTCAAATGCTATTGGAGAAGATAGCCTATCTAGCTTTCAACTTTTCCTGTGTGGGTTGGCTGCTGGTACATGCGCTAAGCTTGTTTGTCATCCACTTGATGTAGTCAAGAAAAGATTTCAGATTGAAGGTCTGCAAAGGCATCCAAGATATGGAGCTCGTGTGGAACACCGTGCGTACAGAAACATGTTTGACGCCATGAAACGGATATCACAGGCAGAAGGTTGGGCTGGTCTGTATAAGGGGATCATCCCATCAACTGTTAAAGCTGCACCAGCTGGTGCTGTAACATTTGTAGCATATGAATTGACATCAGATTGGCTCGAGTCAATTTTGACTTGA 903 0.3898 LIKQTSACISGFLLTKTPNIKFFKFYLSLLKLKFNINLIITKYLNLLLHYGFWRGNVPALLMVMPYTSIQFTVLHKLKSFASGSSKSENHINLSPYLSYVSGALAGCTATVGSYPFDLLRTILASQGEPKVYPNMRSAFVDIVKTRGFSGLYAGLSPTLVEIIPYAGLQFGTYDTFKRWAMAWNHTQYSNAIGEDSLSSFQLFLCGLAAGTCAKLVCHPLDVVKKRFQIEGLQRHPRYGARVEHRAYRNMFDAMKRISQAEGWAGLYKGIIPSTVKAAPAGAVTFVAYELTSDWLESILT* 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo04g0387 300 ProSiteProfiles Solute carrier (Solcar) repeat profile. 197 294 IPR018108 -
Amo04g0387 300 SUPERFAMILY Mitochondrial carrier 50 289 IPR023395 -
Amo04g0387 300 Pfam Mitochondrial carrier protein 197 295 IPR018108 -
Amo04g0387 300 Pfam Mitochondrial carrier protein 94 180 IPR018108 -
Amo04g0387 300 PRINTS Mitochondrial carrier protein signature 55 75 IPR002067 GO:0055085
Amo04g0387 300 PRINTS Mitochondrial carrier protein signature 108 126 IPR002067 GO:0055085
Amo04g0387 300 PRINTS Mitochondrial carrier protein signature 152 170 IPR002067 GO:0055085
Amo04g0387 300 PRINTS Mitochondrial carrier protein signature 206 228 IPR002067 GO:0055085
Amo04g0387 300 Gene3D Mitochondrial carrier domain 48 297 IPR023395 -
Amo04g0387 300 ProSiteProfiles Solute carrier (Solcar) repeat profile. 93 179 IPR018108 -
Amo04g0387 300 PANTHER SOLUTE CARRIER FAMILY 25 51 299 - -
Amo04g0387 300 PANTHER MITOCHONDRIAL CARRIER PROTEIN-RELATED 51 299 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo04g0387 Amo-Chr4 7590311 7595235 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo04g0387 51 300 Organic Solute Cotransporters AT3G21390 78.740 1.11e-148 419
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo04g0387 K15108 - gmx:100784986 468.388
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo14g1513 14 26223134 26227654 Amo04g0387 04 7590311 7595235 hybridization
Amo01g3482 01 107492910 107495964 Amo04g0387 04 7590311 7595235 PCT
Amo11g2653 11 134690636 134693848 Amo04g0387 04 7590311 7595235 PCT
Amo04g0387 04 7590311 7595235 Amo01g3482 01 107492910 107495964 PCT
Amo04g0387 04 7590311 7595235 Amo11g2653 11 134690636 134693848 PCT