Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g3482 ATGGAGGAGCATAGTCAATTGAAGCGTGCCATTATTGATTCCTCTGCTGGGGCAATTTCCGGTGGAATTTCAAGGACAGTAACCTCTCCCCTCGATGTTATTAAGATTAGGTTCCAGGTTCAACTAGAGCCCACATCTTCATGGGCTTTACTACGCAAGGATTTTGCTGCACCATCAAAATACACTGGTATATTTCAAGCATCTAAAGATATTTTCAGAGAAGAAGGTTTTCAGGGTTTTTGGCGGGGGAATGTACCGGCATTGCTTATGGTTATGCCATATACAGCTATACAGTTTACAGTTTTACACAAGTTGAAAACTCTTGCCTCTGGTTCTTCCAAGTCAGAGGATCACAGTAGTTTGAGCCCTTATCTGTCCTATGTCAGTGGGGCATTAGCTGGATGTGCAGCTACAATAGGGTCTTACCCGTTTGATCTTCTCCGAACCATATTAGCTTCTCAGGGGGAGCCAAAGGTGTATCCAAACATGAGGTCAGCATATCTTGATATCGTCCAGACTCGGGGATACAAAGGCTTGTATGCTGGATTGTCACCGACGCTAGTTGAGATTATACCTTATGCAGGCCTACAATTTGGCACCTATGATACATTTAAGCGTTGGGCCATGGCTTGGAACCATAGATATTCCAATACCACCACAGGAGGTAACCTGTCTAGCTTCGAACTCTTCGTTTGTGGGTTGGCAGCTGGAACATGTGCAAAACTTGTCTGTCATCCACTTGATGTAGTCAAGAAAAGGTTTCAGATTGAGGGGCTTCAGAGGCATCCAAGATATGGAGCAAGAGTTGAGCTTCATACATACAGGAATATGTCTGATGCCTTGAGCCGGATAATACGGTCGGAAGGTTGGGCCGGTCTATACAAGGGGATACTACCGTCAACCGTTAAAGCCGCACCAGCCGGGGCTGTAACATTTGTTGCATATGAGTTGACTTCTGATTGGCTAGAGTCCCTTTCAACTTGA 984 0.4522 MEEHSQLKRAIIDSSAGAISGGISRTVTSPLDVIKIRFQVQLEPTSSWALLRKDFAAPSKYTGIFQASKDIFREEGFQGFWRGNVPALLMVMPYTAIQFTVLHKLKTLASGSSKSEDHSSLSPYLSYVSGALAGCAATIGSYPFDLLRTILASQGEPKVYPNMRSAYLDIVQTRGYKGLYAGLSPTLVEIIPYAGLQFGTYDTFKRWAMAWNHRYSNTTTGGNLSSFELFVCGLAAGTCAKLVCHPLDVVKKRFQIEGLQRHPRYGARVELHTYRNMSDALSRIIRSEGWAGLYKGILPSTVKAAPAGAVTFVAYELTSDWLESLST* 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g3482 327 PRINTS Mitochondrial carrier protein signature 13 26 IPR002067 GO:0055085
Amo01g3482 327 PRINTS Mitochondrial carrier protein signature 26 40 IPR002067 GO:0055085
Amo01g3482 327 PRINTS Mitochondrial carrier protein signature 83 103 IPR002067 GO:0055085
Amo01g3482 327 PRINTS Mitochondrial carrier protein signature 136 154 IPR002067 GO:0055085
Amo01g3482 327 PRINTS Mitochondrial carrier protein signature 180 198 IPR002067 GO:0055085
Amo01g3482 327 PRINTS Mitochondrial carrier protein signature 233 255 IPR002067 GO:0055085
Amo01g3482 327 ProSiteProfiles Solute carrier (Solcar) repeat profile. 121 207 IPR018108 -
Amo01g3482 327 Gene3D Mitochondrial carrier domain 5 324 IPR023395 -
Amo01g3482 327 ProSiteProfiles Solute carrier (Solcar) repeat profile. 8 108 IPR018108 -
Amo01g3482 327 SUPERFAMILY Mitochondrial carrier 10 316 IPR023395 -
Amo01g3482 327 Pfam Mitochondrial carrier protein 224 322 IPR018108 -
Amo01g3482 327 Pfam Mitochondrial carrier protein 121 208 IPR018108 -
Amo01g3482 327 Pfam Mitochondrial carrier protein 14 109 IPR018108 -
Amo01g3482 327 ProSiteProfiles Solute carrier (Solcar) repeat profile. 224 321 IPR018108 -
Amo01g3482 327 PANTHER MITOCHONDRIAL CARRIER PROTEIN-RELATED 4 324 - -
Amo01g3482 327 PANTHER SOLUTE CARRIER FAMILY 25 4 324 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g3482 Amo-Chr1 107492910 107495964 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g3482 1 324 Organic Solute Cotransporters AT3G21390 75.076 0.0 525
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g3482 K15108 - gmx:100805353 570.466
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo01g3482 01 107492910 107495964 Amo11g2653 11 134690636 134693848 hybridization
Amo01g3482 01 107492910 107495964 Amo14g1513 14 26223134 26227654 PCT
Amo01g3482 01 107492910 107495964 Amo04g0387 04 7590311 7595235 PCT
Amo14g1513 14 26223134 26227654 Amo01g3482 01 107492910 107495964 PCT
Amo04g0387 04 7590311 7595235 Amo01g3482 01 107492910 107495964 PCT