Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g4245 ATGGGATCGGCGGGGGAGTGGCTGGAGAAGGCGCTGGTGGAATTGTGTTCGAAGATAGAGACGGGYTTGGGTTTGGGTTTGGATGAAGAGATTATAAAGGGACTTGTTTCTTACTGTGACCTTGCTGAGCCTCGCGATGCTAAGGAGTACCTTGATAATATAATTGGTCAGGAAGCCGGGAAGCCTGTGATTGAAGAATATTTAAGACGGAGGGGTCACTTAGAACTCACAACCAAATCCAATGTTCCAACTGCCCAATTGCATGCCTATGTCAAACCTTCAGTTGAGGCATCTGCAGGMGGAAGTAAGAAATCATCGAGAGCACCAAAAGCAGTTACAGTCCAAAGAAGTAATGCCGAACCCATCAAGAATGCAGTTCCCAGCAATCAGAAAAATCAGGTTCCAACTTCAGGCGGTGAATCGAGTACATCACAGAAAGGAAACCAAGGGAATTCCAAAAAGAAGAAGGCTGGGAAAGCCATTTCGCTTGCCGAGGCAGCCAAAGGGTCAATTGTGTTTCAGCAGGGAAGACCYTGCTCTTGTCAAGCTCGTCGTCACAGGCTGGTCAGCAATTGCTTATCATGTGGCAAAATAGTTTGTGAACAAGAAGGAGAGGGGCCTTGCCATTTCTGCGGCGCACTTGTGTTGAAAGAGGGCAGCTCGTACGCTGGTCTGGAAGAAACATTGCCCCCTTTATCGAATACCGAAGCTGCTGCTGAAGCTTATGCAAAGAGGCTTGTCGAATATGATCGAAATGCWYCWGCTCGTACAACTGTTATCGATGACCAAAGTGACTATTATGAGATTGATGGAAACAGTTGGTTGTCAAAGGAGGAGAAAGAGATGTTGAAGAAGAAACAAGAGGAGATGGAAGAAGCTGAACGAGCCAAACGGAATAAAGTGGTTGTGACTTTTGATCTGGTTGGACGCAAGGTTCTTCTGAATGAAGATGAAGTTTCAGAACTAGAGTCTGACAATAGAATACTACGTCCACCAAATGAAAAGGAAGTGAACCGTATCAGACCAAATCCAAGTCTTAGAYTACAGCCCATTTTTGTAGACCTAGGATTCACTAAGAAGCATACAAAAGATAGGCAAACAAACAAAGGCGTAAGCAACAGTTTGTGCCTGGAGATTACTGGGAGGGTGCAACATGAAAGCAATGACATGAAGTATTTTATGATGGACAACCAATTGGCAGCAGCAGCTTCAAGTGAAAAATTTTGGAAAGCATCTTCTGCAAATGGAGTATACGATGGTGATGATGGTGAATGTTTTAGGAGTAACCAATGA 1293 0.4447 MGSAGEWLEKALVELCSKIETGLGLGLDEEIIKGLVSYCDLAEPRDAKEYLDNIIGQEAGKPVIEEYLRRRGHLELTTKSNVPTAQLHAYVKPSVEASAGGSKKSSRAPKAVTVQRSNAEPIKNAVPSNQKNQVPTSGGESSTSQKGNQGNSKKKKAGKAISLAEAAKGSIVFQQGRPCSCQARRHRLVSNCLSCGKIVCEQEGEGPCHFCGALVLKEGSSYAGLEETLPPLSNTEAAAEAYAKRLVEYDRNAXARTTVIDDQSDYYEIDGNSWLSKEEKEMLKKKQEEMEEAERAKRNKVVVTFDLVGRKVLLNEDEVSELESDNRILRPPNEKEVNRIRPNPSLRLQPIFVDLGFTKKHTKDRQTNKGVSNSLCLEITGRVQHESNDMKYFMMDNQLAAAASSEKFWKASSANGVYDGDDGECFRSNQ* 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g4245 430 MobiDBLite consensus disorder prediction 108 151 - -
Amo01g4245 430 Coils Coil 232 252 - -
Amo01g4245 430 MobiDBLite consensus disorder prediction 96 159 - -
Amo01g4245 430 Pfam Putative zinc finger motif, C2HC5-type 177 217 IPR009349 GO:0005634|GO:0006355|GO:0008270
Amo01g4245 430 PANTHER TRANSCRIPTION REGULATOR/ ZINC ION BINDING PROTEIN 3 427 - -
Amo01g4245 430 PANTHER THYROID RECEPTOR INTERACTING PROTEIN RELATED 3 427 IPR039128 -
Amo01g4245 430 Coils Coil 276 303 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g4245 Amo-Chr1 118132683 118135174 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g4245 K23398 - gmx:100810833 608.986
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo01g4245 01 118132683 118135174 Amo11g2228 11 122142596 122144731 hybridization
Amo01g4245 01 118132683 118135174 Amo11g2227 11 122136748 122139666 hybridization