Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo11g2228 ATGAATATCTCGGAACAGCGGTGGGTTTCATTGCTGAGCAAGTGCTGCACCGTGAGGACCACCAAGCAAGTCCACGCTCAAATCTACACAACCGGCTTCCACGACGACCCAATCGTCTTCGGGAAGYTTCTTCTCCACTGCGCAGTTTCCGTATCCGATGCTCTCCACTACGCTCGCCGTCTCTTCCACCACTTCCSTAACCCTGACACCTTCATGTACAACACCCTCATTCGCGCACTCGCTCTCTCAGAAATCCCTCACCATGCCATTCACCCCTTCCTCCAAATGCGCCGCCACGACACCCTTATTCCCGATAGCTTCACTTTCGCTTTTGCGCTCAAAGGACTCGCTAACTGCGGAGACCTCAGAGCTGGTKTTCAGTTGCATTGTCAAGCTCTACGTCATTGCTTTCATACCCATGTTTTTGTTGGGACGACATTGATYAGTATGTATGGCGAATGCGGTGATTCTTGCTCTGCAAGGAAGGTGTTCGAGGAAATGCCAGACCCAAATGTTGTAACTTGGAATGCTGTTGTCACTGCTTGTTTCAGGTGTGGGGATATCTGTGGCGCGCAAGGTGCGTTTGAACAGATGCCTATTAGGAATTTGACCTCTTGGAATGTGATGCTTGCTGGTTACACCAAAGCAGGGGAGCTTGAGTTGGCAAGTAGAGTTTATTCTGAGATGACTCTGAAGGATGGTGTTTCTTGGAGCACCATGATTGTTGGGTTTGCCCACAATGGTTATTTTGATGAAGCTTTTGGGTTTTTCAGGGAGATGCTGCGAGAGGGGATCAGGCCGAATGAGGTGAGCCTTACTGGGGTGTTGTCTGCTTGCGCTCAAGCCGGGGCGTTTGCGTTTGGGAAGATTTTACATGGGTGTATGGAGAAAGCTGGGTTTCTTCACATTGTTTCGGTGAATAATGCTCTCATAGATACCTACTCCAAATGTGGGAATGTGGCCATGGCTAGGTTAGTGTTTGAAAATGTGCCGATGGCGAGGAACATTGTGACATGGACGTCAATGATAGCAGGCCTYGCAATGCAGGGTCATGGAGAAGAGGCAATACGGCTTTTCCRTGAGATGGAAGACTCTGGAGTTAGGCCRGATGGTATTACCTTCATCTCTCTTCTATATGCTTGTAGCCATAGCGGCTTGGTTGACCAAGGTTGTGCTTATTTTTCCAAGATGAAGAATATGTATGGTATTGTACCTGCTGTTGAGCATTATGGTTGTATGGTTGATCTGTATGGTCGAGCCGCTCAGTTGCAGAAAGCCTATGAATTTGTATGTCAAATGCCAATTTCACCCAACGCTATCATTTGGAGGACTCTCCTAGGGGCTTGCAGCATTCATGGTAATATCGAGTTGGCAGAGCTTGTGAAAGCAAGGCTTGCTGAGATKGATCCAAACAACTCTGGTGACCATGTACTGCTCTCCAATGTTTATGCTGTAGCAGGGAAATGGAAGGATGTTGCCAGCATAAGAAGAACAATGACTGAAAGGAGCATGAAAAAAACACCTGGTTGGAGCATGATTGAAATTGACAAAGTCATATATGGTTTTGTGGCAGGTGAAAAGCCGAACGAGGTTACAGAAGAGGCTCATAGTAAATTGAGGGAAATCATGCTGAGACTCAGAGCAGAAGTAGGCTATGCGCCMCAAGTAAGGAGTGTCTTGCATGATATTGAAGAGGAGGAAAAAGAGGATTCGGTGTCTAAGCACAGCGAGAAGCTTGCTGCAGCTTTTGGAATAGCAAAAGTTCCTAARGGAAGGGTTTTAAGAATAGTGAAGAACCTGAGGGTTTGTGGGGACTGCCATACTTACATGAAGCTGATTTCTAAAGTTTATGAGGTAGAAATCATTGTGAGAGATAGAAGCCGCTTCCACTCATTCAAAGGTGGTTTTTGTTCTTGCAGAGATTATTGGCTTCCAGAGAAGCATTCAGCTATTCTGTCAAGTGTTAACCAAGAGGAAATTGAGTTAAACGAGGACTGTTTAGAAGTATAG 2010 0.4617 MNISEQRWVSLLSKCCTVRTTKQVHAQIYTTGFHDDPIVFGKXLLHCAVSVSDALHYARRLFHHFXNPDTFMYNTLIRALALSEIPHHAIHPFLQMRRHDTLIPDSFTFAFALKGLANCGDLRAGXQLHCQALRHCFHTHVFVGTTLISMYGECGDSCSARKVFEEMPDPNVVTWNAVVTACFRCGDICGAQGAFEQMPIRNLTSWNVMLAGYTKAGELELASRVYSEMTLKDGVSWSTMIVGFAHNGYFDEAFGFFREMLREGIRPNEVSLTGVLSACAQAGAFAFGKILHGCMEKAGFLHIVSVNNALIDTYSKCGNVAMARLVFENVPMARNIVTWTSMIAGLAMQGHGEEAIRLFXEMEDSGVRPDGITFISLLYACSHSGLVDQGCAYFSKMKNMYGIVPAVEHYGCMVDLYGRAAQLQKAYEFVCQMPISPNAIIWRTLLGACSIHGNIELAELVKARLAEXDPNNSGDHVLLSNVYAVAGKWKDVASIRRTMTERSMKKTPGWSMIEIDKVIYGFVAGEKPNEVTEEAHSKLREIMLRLRAEVGYAPQVRSVLHDIEEEEKEDSVSKHSEKLAAAFGIAKVPKGRVLRIVKNLRVCGDCHTYMKLISKVYEVEIIVRDRSRFHSFKGGFCSCRDYWLPEKHSAILSSVNQEEIELNEDCLEV* 670
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo11g2228 669 PANTHER OS01G0913400 PROTEIN-RELATED 13 584 - -
Amo11g2228 669 Pfam E motif 452 514 IPR046848 -
Amo11g2228 669 Pfam PPR repeat family 334 382 IPR002885 -
Amo11g2228 669 Pfam PPR repeat family 233 280 IPR002885 -
Amo11g2228 669 PANTHER - 13 584 - -
Amo11g2228 669 Gene3D Tetratricopeptide repeat domain 385 578 IPR011990 GO:0005515
Amo11g2228 669 TIGRFAM PPR: pentatricopeptide repeat domain 205 236 IPR002885 -
Amo11g2228 669 TIGRFAM PPR: pentatricopeptide repeat domain 337 370 IPR002885 -
Amo11g2228 669 TIGRFAM PPR: pentatricopeptide repeat domain 235 269 IPR002885 -
Amo11g2228 669 Gene3D Tetratricopeptide repeat domain 6 169 IPR011990 GO:0005515
Amo11g2228 669 Gene3D Tetratricopeptide repeat domain 170 287 IPR011990 GO:0005515
Amo11g2228 669 Pfam DYW family of nucleic acid deaminases 551 643 IPR032867 GO:0008270
Amo11g2228 669 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 202 232 IPR002885 -
Amo11g2228 669 Gene3D Tetratricopeptide repeat domain 288 384 IPR011990 GO:0005515
Amo11g2228 669 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 335 369 IPR002885 -
Amo11g2228 669 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 233 267 IPR002885 -
Amo11g2228 669 Pfam PPR repeat 145 168 IPR002885 -
Amo11g2228 669 Pfam PPR repeat 205 230 IPR002885 -
Amo11g2228 669 Pfam PPR repeat 173 199 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo11g2228 Amo-Chr11 122142596 122144731 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo11g2228 28 643 Glycoside Hydrolase AT3G49170 33.333 4.57e-117 368
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo11g2228 - - lja:Lj4g3v1632020.2 1097.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo11g2228 11 122142596 122144731 Amo11g2228 11 122142596 122144731 ECH
Amo01g4245 01 118132683 118135174 Amo11g2228 11 122142596 122144731 hybridization