Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g3311 ATGGGCGCGCCAGAGAAATCACAGGCTAACGCCAATTCGATGCAGCGTGTCAAGGTCTATCGTCTTAATGATGACGGGAAATGGGATGACCAGGGTACTGGACATGTTGTTGTTGATTATATAGAGCGATCGGAAGATCTGGGTTTACATGTTTTTGATGAAGACGACAATGATCAGATACTTGTGCACCGCATCAATGCTGAAGATATTTATAGGAAACAAGAAGATACAATTATCTCGTGGAGAGATCCAGAATATGGTACAGATTTGGCACTTAGTTTTCAAGAGACTAGTGGCTGCTCTTACATATGGGATCATATTTGCAATGTGCGGAGGAATATACATTTTAATACAATAAATAGTGAGCCATTTCACAGCGTCAACAGTGAGTTAAGGGAGTTGCCTGCTGTACAGCTATCCACACTTCCTATGATTCTTAAGATTGTGGTTGACAGTGGCATTACAGATCAGTTGCGGCTTACAGATCTAATTTTAAGTGATCAAGAATTTGTTCGGAAGCTGATGGAAGTATTTCGACTATGTGAAGACTTAGAAAATATAGACGGCCTTCACATGATTTATAAAATAGTCAAAGGGATCATTTTACTTAATAGCACACAGATTTTTGAGAGGATTTTTAGTGATGAATATATAGTGGACATTATTGGTGCGCTTGAGTATGATCCAGAGCTTCCGTGTGTTCAACATCACCGTAAATTCTTAAAGGAGCATGTAATTTTTAAGGAGGCCATACCTATAAAAGATCCCTTTGTCTTGTCAAAGATCCATCAGACATATAGAGTTGGTTTTTTGAAGGATGTTGTTTTGGCTAGGGTATTGGATGAGGCTACTAGTGCAAATCTCAACTCCATAATACATGCAAATAATGCCATGGTTGTTTCTTTGTTGAAGGATGACAACACATTTATCCAGGAGTTGTTTGCTAGGTTAAAATTGCCTTCCACCTCTCCTGAATCGAAGAAAAACTTGGTATATTTCCTGCACGAGTTTTGTACCTTAAGCAAGAGCTTACAGATGGTCCAGCAGCTTCGGCTCTTTAGGGATCTAATGAATGAAGGCGTCTTTGATGTCATCACCCAGGTTTTGCAAAGTCAAGATAAGAAGTTGGTGCTAATTGGAACAGATATCCTGATTCTCTTCTTGAATCAAGATCCTAATCTTTTGCGATCCTATGTTGTTCGGCAGGAAGGAATAACACTTCTTGGACTTCTGGTTAAGGGAATGATAACAGATTTTGGGGACAACATGCATTGCCAATTTCTTGAGATCCTTCGCAGTCTATTGGATTCGTGTACATTATCTGGACCACAGAGGGACACAGTTATTGATATTTTCTTTGAGAAGCATTTGGGTCAACTGGTTGAAGTTGTTGCAGAATCTTGTCCTTCAGAAAGTATGGTTGATGCAAGCAGCAAGTTAATAGGCTCTAGAAGAAGAGCTCAATGTCAGAATGTGACAAAGCCAGAGATACTGTCCAATATATGTGAATTGCTATGCTTTTGTGTCCTACATCACCCTTACAGGATAAAGTGCAATTTTCTTCTTAACAATGTGATTGAAAAAATTTTGCTACTGATACAGAGAAGAGAAAGATACTTAGTTGTTGGTGCTGTCCGTTTTGTTCGTACTATACTTTCCCGCCATGATGAGCATCTTATAAACTATTTTGTACGGAACAATGTTCTCAAACCAATTATAGATGCCTTTGTTGCTAATGGCAACCGCTACAATCTGCTCCATTCTGCTGTTCTGGAACTTCTGGACTATATACGGAAGGAGAATATGAAATCATTGTTGAAATATATAATTGATTCCTTCTGGGACAAGTTGGTGAAATTTGAGAATTTGGCATGCATTCACTCTGTGAGAGTGAAATATGAGCAGTCTATGGATAATGGTGGCACAAAAGATGCTGCTAATGTGGTCGATCTGCGAAGAAGAACTGATGAGCGTGCTCTGGAGGAGGAGGAGGAACATTACTTTAATGAGGACAGTGATGAGGAGGATACAGCCTCTGCATCCATTCCACCTAATCAGAAAAGGGAACGACAACCTAGTTTATCTAATGGAGTTGCTACAAGCTATTCACAAACAAGTCCAAGGTCCGGTGGACTGGTTGACTATGATGATGATGAGGATGATGAAGATTACAGGCCACCGCCAAAGAAGCAGAAAGAAGCTTCTGAAGATGACGGGGAAATGGAGTTTCTTCGGCTCAAAAGGAATCTGCCTTCAAAGGACAAGGAATCAGAACATGTGAAGAAGCAGAAGTCATTCAAGAATACAAAATCTAAAGATAGTGTTTTTGCTGCTTTGTGTTCAACCTTAAGCCAAGCTGTGCTACCTGGTAACAAAACTACAAACAACGTTCATACAGGTGGTGCACCAACGATGAACTCAAGTGAAGACAATCAGGGAGAGGGGGCAAATGTTTCTACAAGTAGCTCTGAAAATAATAGCAAGGAAGCAGCTGAAGATAACCATGTAGAAAAAGAAACCGCAGCCTCCAGAGGATTTTCTGATCGCTTGCATGGAACGTCAGATAACATACAATTGAGTGGAGAGGAACGTCCATTGGTTCCGCCAAAATCGTCGCCAGAGATGACCGTAAATGGATCATAA 2643 0.403 MGAPEKSQANANSMQRVKVYRLNDDGKWDDQGTGHVVVDYIERSEDLGLHVFDEDDNDQILVHRINAEDIYRKQEDTIISWRDPEYGTDLALSFQETSGCSYIWDHICNVRRNIHFNTINSEPFHSVNSELRELPAVQLSTLPMILKIVVDSGITDQLRLTDLILSDQEFVRKLMEVFRLCEDLENIDGLHMIYKIVKGIILLNSTQIFERIFSDEYIVDIIGALEYDPELPCVQHHRKFLKEHVIFKEAIPIKDPFVLSKIHQTYRVGFLKDVVLARVLDEATSANLNSIIHANNAMVVSLLKDDNTFIQELFARLKLPSTSPESKKNLVYFLHEFCTLSKSLQMVQQLRLFRDLMNEGVFDVITQVLQSQDKKLVLIGTDILILFLNQDPNLLRSYVVRQEGITLLGLLVKGMITDFGDNMHCQFLEILRSLLDSCTLSGPQRDTVIDIFFEKHLGQLVEVVAESCPSESMVDASSKLIGSRRRAQCQNVTKPEILSNICELLCFCVLHHPYRIKCNFLLNNVIEKILLLIQRRERYLVVGAVRFVRTILSRHDEHLINYFVRNNVLKPIIDAFVANGNRYNLLHSAVLELLDYIRKENMKSLLKYIIDSFWDKLVKFENLACIHSVRVKYEQSMDNGGTKDAANVVDLRRRTDERALEEEEEHYFNEDSDEEDTASASIPPNQKRERQPSLSNGVATSYSQTSPRSGGLVDYDDDEDDEDYRPPPKKQKEASEDDGEMEFLRLKRNLPSKDKESEHVKKQKSFKNTKSKDSVFAALCSTLSQAVLPGNKTTNNVHTGGAPTMNSSEDNQGEGANVSTSSSENNSKEAAEDNHVEKETAASRGFSDRLHGTSDNIQLSGEERPLVPPKSSPEMTVNGS* 881
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g3311 880 SUPERFAMILY ARM repeat 299 607 IPR016024 -
Amo01g3311 880 Pfam Phosphatase 4 regulatory subunit 3 168 356 IPR006887 -
Amo01g3311 880 MobiDBLite consensus disorder prediction 788 880 - -
Amo01g3311 880 PANTHER BINDING PROTEIN-RELATED 1 824 - -
Amo01g3311 880 Gene3D - 10 128 IPR011993 -
Amo01g3311 880 MobiDBLite consensus disorder prediction 788 827 - -
Amo01g3311 880 MobiDBLite consensus disorder prediction 659 773 - -
Amo01g3311 880 MobiDBLite consensus disorder prediction 678 710 - -
Amo01g3311 880 Gene3D - 299 614 IPR011989 -
Amo01g3311 880 MobiDBLite consensus disorder prediction 828 845 - -
Amo01g3311 880 PANTHER ATP SYNTHASE GAMMA-RELATED 1 824 - -
Amo01g3311 880 MobiDBLite consensus disorder prediction 663 677 - -
Amo01g3311 880 MobiDBLite consensus disorder prediction 723 769 - -
Amo01g3311 880 SUPERFAMILY PH domain-like 15 110 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g3311 Amo-Chr1 105428307 105441033 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g3311 K17491 - gmx:100786790 1403.65
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo01g3311 01 105428307 105441033 Amo14g1352 14 22260493 22275253 PCT
Amo01g3311 01 105428307 105441033 Amo04g0014 04 168897 183585 PCT
Amo14g1352 14 22260493 22275253 Amo01g3311 01 105428307 105441033 PCT
Amo04g0014 04 168897 183585 Amo01g3311 01 105428307 105441033 PCT