Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g1520 ATGGATTGCTTAGAACTCTACAAACAGAGGAATTTGAAAGAGGAAGGAGAAGAAGAAGAGGTGACACTTGATGGGAGTGTCGATTGGAATGGACGCCCTGCTATCAGATCCAAATCTGGAACATGGGTTGCTGGAACTATCATACTCTTGAATCAAGGTTTGGCAACTTTAGCATTCTTTGGGATTGGAGTGAACTTGGTTCTGTTCCTAACAAGGGTGATGGGGCAGAATAATGCTGATGCTGCTAATAGTGTGAGCAAGTGGACTGGCACTGTTTATATCTTCTCTCTTGTTGGGGCTTTTCTTAGTGATTCTTATTGGGGAAGATACAAAACTTGTGCCATCTTTCAGGTCATCTTTGTCATGGGTCTAATATCCTTATCACTATCATCGTACCTATTCTTGATTAGACCTAAAGATTGTGGGAATGAGACAGTTGTATGTGGGAAACATTCAAGCATGGAGATGGGGATGTTCTACCTCTCAATCTATCTCATTGCTCTAGGAAATGGAGGATACCAACCAAACATTGCAACATTTGGGGCTGATCAATTTGATGAAGAGCACTCAAAGGAAGGTTACTCAAAAGTGGCATTCTTTAGCTACTTCTACTTGGCTTTGAACCTTGGTTCCCTCTTCTCAAACACAATTCTGGGCTACTTTGAAGATGAAGGATTGTGGACACTTGGATTTTGGACATCTGCAGGGTCTGCCTTTGCTGCCCTGCTCTTGTTTCTCGTCGGCACGCCGAGATATCGACACTTTAAGCCTTGCGGCAACCCTCTTTCCAGGTTTTGCCAAGTCCTTGTGGCGGCGTCAAGGAAGTGTGGAGTTCAAATGACACCAAATGGAGATGACTTGTATGTCTTGGATGAAAAGGAATCTCCCAACAATGGCAATAGAAGGATTCTTCACACCCATGGATTCAAGTTTCTGGATAGGGCGGCATTTATTTCTTCAAGAGATCTAGAGGACAAAAAAGGAGGCATCAACAACCCTTGGCACCTTTGTCCTATAACTCAAGTTGAAGAAGTGAAGTGCATACTAAGGCTTCTTCCAATTTGGCTCTGTACCATTATATACTCAGTGGTTTTCACACAAATGGCATCTCTCTTTGTGGAGCAAGGGGCTGCCATGAAAACAACAATCTCCCATTTCAAAATACCCCCAGCAAGCATGTCCAGTTTTGACATCCTTAGTGTAGCTGTCTTCATTTTCTTCTACCGTCGAGTGCTCGATCCGCTTGTCGGGAAATTGAAAAAGACAAGCTCCAAGGGACTTACAGAGCTTCAAAGAATGGGAGTTGGTCTTGTTATAGCCATAATGGCGATGGTTTCGGCCGGAATAGTCGAATGCTATAGGCTTAAGTATGCAAACCAAGGATGTCTCCATTGTAGTGGCTCAAGCTCTCTAAGCATCTTCTGGCAAATTCCTCAGTATGCTCTTATAGGAGCTTCAGAGGTTTTCATGTATGTAGGGCAACTAGAGTTCTTCAATGCTCAAACCCCAGATGGATTAAAGAGCTTTGGAAGTGCACTTTGCATGACATCAATCTCATTAGGGAACTATGTGAGTTGCTTACTAGTTAGCATGGTTATGAAGGTCTCAACTGAGGATCACATGCCAGGGTGGATCCCTGGAAACCTTAATAGAGGTCACTTAGATAGGTTTTACTTTCTCCTCGCCGCTTTAACATCCATAGACTTGATCGCTTATATTGCCTGTGCCAAATGGTTCAAAAGTATACAATTGGAAGGGAAGGATGAAGATGATGATCACCATACAAGTTGCAAAGTGTGA 1800 0.4317 MDCLELYKQRNLKEEGEEEEVTLDGSVDWNGRPAIRSKSGTWVAGTIILLNQGLATLAFFGIGVNLVLFLTRVMGQNNADAANSVSKWTGTVYIFSLVGAFLSDSYWGRYKTCAIFQVIFVMGLISLSLSSYLFLIRPKDCGNETVVCGKHSSMEMGMFYLSIYLIALGNGGYQPNIATFGADQFDEEHSKEGYSKVAFFSYFYLALNLGSLFSNTILGYFEDEGLWTLGFWTSAGSAFAALLLFLVGTPRYRHFKPCGNPLSRFCQVLVAASRKCGVQMTPNGDDLYVLDEKESPNNGNRRILHTHGFKFLDRAAFISSRDLEDKKGGINNPWHLCPITQVEEVKCILRLLPIWLCTIIYSVVFTQMASLFVEQGAAMKTTISHFKIPPASMSSFDILSVAVFIFFYRRVLDPLVGKLKKTSSKGLTELQRMGVGLVIAIMAMVSAGIVECYRLKYANQGCLHCSGSSSLSIFWQIPQYALIGASEVFMYVGQLEFFNAQTPDGLKSFGSALCMTSISLGNYVSCLLVSMVMKVSTEDHMPGWIPGNLNRGHLDRFYFLLAALTSIDLIAYIACAKWFKSIQLEGKDEDDDHHTSCKV* 600
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g1520 599 Gene3D MFS general substrate transporter like domains 13 588 IPR036259 -
Amo01g1520 599 Pfam POT family 110 538 IPR000109 GO:0016020|GO:0022857|GO:0055085
Amo01g1520 599 CDD MFS_NPF7 42 578 - -
Amo01g1520 599 SUPERFAMILY MFS general substrate transporter 32 590 IPR036259 -
Amo01g1520 599 PANTHER OLIGOPEPTIDE TRANSPORTER-RELATED 17 588 IPR000109 GO:0016020|GO:0022857|GO:0055085
Amo01g1520 599 PANTHER PEPTIDE TRANSPORTER 17 588 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g1520 Amo-Chr1 31618774 31625791 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g1520 1 598 Organic Solute Cotransporters AT1G32450 76.442 0.0 955
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g1520 K14638 - gmx:100808276 1045.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo01g1520 01 31618774 31625791 Amo11g1089 11 32657631 32664613 hybridization
Amo05g0467 05 5424228 5428405 Amo01g1520 01 31618774 31625791 PCT
Amo01g1520 01 31618774 31625791 Amo05g0467 05 5424228 5428405 PCT