Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g0334 ATGTTGTTAGGTAGAACAAGCAGCAGCATTGGCATCAACAGCAGCGACCGAAAGGACACAGAATATAACGCCTTTCTCGCACCCTTCACATACCCAGCATCTAACGATACCTACCTAACCGACTCTTCTTCTAGAACCTTCCAGAACAACAGCAACCACGACGACGATCTTCTTGAGTTCGGGTTTACCAGGCCCGATTTCCCGCCGGGTCAACTCGCTGGCACCGTCGAGTTCTACCGTCGCCACGTGTTCCTCTGCTACAAGAGTCCCGCTGCGTGGCCGCCGCGGATTGAGGCTTGGGAATTTGACCGATTGCCGCGGTTGCTCCACGCCGCCGTCGCCTCCGGTAAAGGTCGCATGAAGAAGGAGACCCTCTTAACAATTTGCGAGGGACATGATGGAACCGAAACATCCAATGGTGATATACTAATTTTTCCAGACATGGTCAGATACAGGCGATTAACACATTTTGATGTGGAAACATTCGTCGAAGAAGTTCTTGTCAATGATGGAGAATGGCGTCCTGGCAACCCCGAAGCCTTGTTGGCTTCATATGTGTTCGTGTGTTCACATGGATCCCGGGACCGGAGATGCGGAGCTTGTGGACCTGTCTTAGTTAGTAGGTTCAGGGAAGAGATAGAGTTACTTGGTCTTCAAGGTAAAGTGTTTGTTAGCCCATGCTCTCACATTGGGAGGCATAAGTGTGGAGGAAATGTCATTATATTCGGGTCAAGCATCAATGGAGAAGCCACTGGCCATTGGTACGGATATGTTACTCCGAAAGATGTACCTTCGTTGATTCAACAACATATAATTAAAGGAGAAATTTTGGACTCGTTATGGAGGGGCCAAATTGGTTTGACAGCAGAAGAACAAAAAAAGAGCCAAGAACAAAGGATTCATCAGAACAGTGTAACAAATTTTAAAGAAAACACAGAAGAGTTCATGGATACAAACAATCATACAACAGGCACTGTTGGGTTTCAATTCCAAGAGAGCATTGCAACCTGTTGCCAAGATAACAGATATTCCTCTTGCCATCAGGACAATCATATGTCGTTAGAAAAGACGAAGATCGCTGGAGCCATTGAGACGGAGGCAAAGCTCTTAACTGATGATGATGAGTTCAGAGAGAATGTGCCGTCTCGGATAAGTAATGGCAAAGCAGCATCACGCAAATTTTGTTCCATTCCAACATGGCTTGACTACTGGGAGCAAGAAGATACTTATGCTGCTCTCTCTGTCGTATGCGCTGCCGTGTCGGTTGTTATTGCCTATCGCTGCTACAAGAACAGCTGA 1299 0.4688 MLLGRTSSSIGINSSDRKDTEYNAFLAPFTYPASNDTYLTDSSSRTFQNNSNHDDDLLEFGFTRPDFPPGQLAGTVEFYRRHVFLCYKSPAAWPPRIEAWEFDRLPRLLHAAVASGKGRMKKETLLTICEGHDGTETSNGDILIFPDMVRYRRLTHFDVETFVEEVLVNDGEWRPGNPEALLASYVFVCSHGSRDRRCGACGPVLVSRFREEIELLGLQGKVFVSPCSHIGRHKCGGNVIIFGSSINGEATGHWYGYVTPKDVPSLIQQHIIKGEILDSLWRGQIGLTAEEQKKSQEQRIHQNSVTNFKENTEEFMDTNNHTTGTVGFQFQESIATCCQDNRYSSCHQDNHMSLEKTKIAGAIETEAKLLTDDDEFRENVPSRISNGKAASRKFCSIPTWLDYWEQEDTYAALSVVCAAVSVVIAYRCYKNS* 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g0334 432 Pfam Sucrase/ferredoxin-like 72 283 IPR009737 -
Amo01g0334 432 PANTHER ACTIN PATCHES DISTAL PROTEIN 1 50 431 IPR009737 -
Amo01g0334 432 PANTHER SUCRASE-LIKE PROTEIN 50 431 - -
Amo01g0334 432 SUPERFAMILY Thioredoxin-like 185 286 IPR036249 -
Amo01g0334 432 Gene3D Glutaredoxin 183 283 - -
Amo01g0334 432 CDD TRX_Fd_Sucrase 184 285 IPR009737 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g0334 Amo-Chr1 5335968 5339919 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g0334 - - gmx:100780395 525.013
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo11g0328 11 5032521 5036706 Amo01g0334 01 5335968 5339919 hybridization
Amo01g0334 01 5335968 5339919 Amo07g0234 07 2131775 2134559 PCT
Amo07g0234 07 2131775 2134559 Amo01g0334 01 5335968 5339919 PCT