Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju08g1559 ATGCCGACGCCGGTCAGCGTAGCAAGGCAATGCTTGACGGAAGAGGCCGCTCGTGTTTTGGACGACGCGGTGGCGGTTGCTCGCCGCCGCAACCATGCTCAGACAACTTCGCTTCATGCTATCTCTGCCTTGCTCGCCTTGCCTTCTTCCCCTCTCAGGGATGGTTGCACTCGCGCGCGTAGCTGCTCATATTCTCCGCGTTTACAATTCAAAGCTTTAGAGCTCTCTGTGGGTGTGTCTCTCGACCGATTGCCCACCACTAAGACTCTCGAGGATGACCCTCCGATATCCAATTCACTCATGGCCGCTGTTAAGCGGTCCCAAGCGAACCAGAGGAGGCATCCAGAGAGTTTTCATTTGATACAGATGCATATGCATCAGCAGCAGCAAGCGGCGTCGTTTTTGAAGGTGGAGCTCAAGCACTTCATTCTGTCCATTCTCGATGATCCGATTGTGAGCAGAGTTTTTGGGGAAGCTGGTTTTCGAAGCTGTGACATCAAGCTTGCATTGCTTCAGCCGCCTATGGCGCAAGCTTCTTCTCGATTCTACCGGGGCCGTTACCCACCTTTATTTTTGTGCAATCTAACAGGTTCCGAAATGGATCGTCCTGGTTTCAACTTCCCTTTCGTGGCGAATCCTGGTCAGAAAGATGGAGACGAAAATTGTAGAAGAATTGCGGAGGTCCTTGTGAGTAAGACAAAGAAGAATCCTTTACTGATGGGTGTTTACGCGAAGGGTGCTCTTAGGAGATTCACTGACACTGTACAGAGAGGTCGAGTGGGTATGTTGCGGGCTGATATCGCTGGGCTTATTATGATTTGCATTGAGAAGGAGATTACTGAGTTTTTTGTTGAAGGTTGTACTGAAGAGAAGATGGGTTTGAAATTTAAGGAATTGAGTGGTGCAGTCGAGCAGTGCTCAGGTCCTGGTATCGTTGTGAATTTTGGAGAGCTTGAGGCATTCTTGGGGGATGGTGTGCCTGGTGTTGCTGTGAATTTTGTGGTCTCACAACTGACAAGCTTATTGGAAATCCATGGTGAGAAATTATGGTTGGTAGGCATGGCAGGAACCTCCGTTATATATTCCAAGTTTTTAACCATGTTCCCAACTGTGGAAAAGGATTGGGATCTGCATCTGCTGACCATGACATCTGCCTCCCCTTCAATTGAGGGGCTTTGCTCTAAATCCAGTTTGATGGGGTCCTTTGTGCCATTTGGTGGTTTCTTTTCTACACCACCTGAATTCAAAAACCCAGTAAGCTTTACAAATCAATCTTCTGCAAGCTGTCATGCATGCAATGAGAAGTATGAGCAAGAAGTTGCTGATATTTTGAAGGTAGATCCTGCAACTTCAGCATCTAGTCACTCCACTATCTTACCTCGGGTGCAACAGGTTAATGTGGATAAAGATAAACGATTGGATGTTGCAAAGACTAATGATGAATTCACAAGTTTGAATGCTACTATGTTGGGATTGCAAAAGAAGTGGACTGATAATTGTCAGCGTCTTCATCACAACGAGTCATTTCCTGACTTAAATATATCCCAAACAAAGGCTCAACTTCCCTCTCTTGACGGCTTACCATTTTGTGTGGGTTTTAGAGAAAGCAGAAGTAATAAAGATCTTTCAGTTGATCAAATTCAACATTCTAAATATGGTCTCTACATGCCTAAAGAGTTACCTAGTATTTACCCATCAAAGCAGATGTTACATGTTTCTTCAGAAACTTCTGGCATTGATACAGGAACTGACAAGGGAGCAGTTGGTTCAAAGAGTCGGCAAACTGATGTGCAGAACCCTTTGGTTGCCCCTTCTCCTGGGGCCAATATGAGTCAGGTTGATCACAGATCTTCTTCCGCCCTTTCTTCTGTGACCACTGATTTGGGATTGGGAACACTATATGCATCAGCAGCTCAGGAGCCAAATACTCCAAAAGTACAAGATCATAGAAAGAGTATACACCACTTCTCGGACTCCATTTCCGCTGATCTTGATGTTGTGAATGAAAATACTTCTCACCATATTGCTCAATCCTCTCCTTGCTCTGGTCCCATGGAAGGGAAACTGGATTCACTAGATTTCAAGTCACTTAACCAGCTTCTTACTGAAAGAGTTAGCTGGCAAGAAGAGGCCATATTTGCCATCAATCGAACCATGTCCCTTTGTAGATGTGGCACCGGAAAGCATAGTGGTTCACATGCTAGAGCAGATGTATGGCTTGCTTTCCTTGGACCTGATAGAGTTGGAAAGAAAAAAATTGGTCTAGCACTTACAGAGATAATATTTGGAAACACTGAAAGGCTAATCTCTGTGGATATGGGTTCCCAAGACAGAGGCTACCCATTAAATGTGGTTTCTGAATGCCAAAAGTCAATTGATCATGACGTGCTTAGGAGGAAGACAGCCGTGGACTATATTGCTGGGGAGTTGAACAAACAACCCCATTCAGTTGTGTTTCTTGAAAATGTAGATAAAGCTGATTTTCTGGTGCAGAATAGTTTGCTCCAGGCTATAAGAACAGGTAAATTTCCAGACTCACATGGCAGGGAAATCAGCGTCAATAATGCAATCTTTATTGTAACTTCAAGTGTCTTCAAAGACGAATACCCTTTCATTTTGGAGAAGGAGCATGTGTTTTCTGAAGATAAAATCCTTGAAGCCAAAAGATGTCAAATGCAGTTATTACTCGGACATTCCTCTGAGGATACCATAAGAAGCAGTGACACAAATGTCAGGATAACTCTGGGAAGAGAGGCTTCCAAACCAGCAATTCTGAACAAAAGAAGACTGAGTGAAAGAAGTGACTCTATAGAACAGGAAACCAAATGCAAGGTACAGAAACAGGTCCTAGAGACATCAAGATCTTTTCTAGATTTGAACATGCCTCTCCAGGAGGTTGAAGAGGACTGGTTCGATGACTTCTGCAGTCAACTTGATGCCAGAATAACTTTTAAGCCCTTCGATTTCGATGCACTTGCTGAGAAAATCTTAAAAAGCATCAGTTCACAGTTTCAGAATACATTTGGATTACAGTTTAAGCTGGAGATTGACTATGAAGTCATGGTACAGATCCTAGCAGCCTCTTGGTTATCTGACAAGAAAAATGCTGTGGAGGATTGGATTGAAAATGTACTGGGCAGAATCTTCAATAAAGCCTTGCAGAAATACCAACCTGAACCTCGGCATTCCATGAAACTAGTTACCTGTGAAGGGATTTTTATGGAAGAACAAGCTCCTGGAGTCTGCCTTCCTACTAATGTTAACCTCAAGTAA 3273 0.4397 MPTPVSVARQCLTEEAARVLDDAVAVARRRNHAQTTSLHAISALLALPSSPLRDGCTRARSCSYSPRLQFKALELSVGVSLDRLPTTKTLEDDPPISNSLMAAVKRSQANQRRHPESFHLIQMHMHQQQQAASFLKVELKHFILSILDDPIVSRVFGEAGFRSCDIKLALLQPPMAQASSRFYRGRYPPLFLCNLTGSEMDRPGFNFPFVANPGQKDGDENCRRIAEVLVSKTKKNPLLMGVYAKGALRRFTDTVQRGRVGMLRADIAGLIMICIEKEITEFFVEGCTEEKMGLKFKELSGAVEQCSGPGIVVNFGELEAFLGDGVPGVAVNFVVSQLTSLLEIHGEKLWLVGMAGTSVIYSKFLTMFPTVEKDWDLHLLTMTSASPSIEGLCSKSSLMGSFVPFGGFFSTPPEFKNPVSFTNQSSASCHACNEKYEQEVADILKVDPATSASSHSTILPRVQQVNVDKDKRLDVAKTNDEFTSLNATMLGLQKKWTDNCQRLHHNESFPDLNISQTKAQLPSLDGLPFCVGFRESRSNKDLSVDQIQHSKYGLYMPKELPSIYPSKQMLHVSSETSGIDTGTDKGAVGSKSRQTDVQNPLVAPSPGANMSQVDHRSSSALSSVTTDLGLGTLYASAAQEPNTPKVQDHRKSIHHFSDSISADLDVVNENTSHHIAQSSPCSGPMEGKLDSLDFKSLNQLLTERVSWQEEAIFAINRTMSLCRCGTGKHSGSHARADVWLAFLGPDRVGKKKIGLALTEIIFGNTERLISVDMGSQDRGYPLNVVSECQKSIDHDVLRRKTAVDYIAGELNKQPHSVVFLENVDKADFLVQNSLLQAIRTGKFPDSHGREISVNNAIFIVTSSVFKDEYPFILEKEHVFSEDKILEAKRCQMQLLLGHSSEDTIRSSDTNVRITLGREASKPAILNKRRLSERSDSIEQETKCKVQKQVLETSRSFLDLNMPLQEVEEDWFDDFCSQLDARITFKPFDFDALAEKILKSISSQFQNTFGLQFKLEIDYEVMVQILAASWLSDKKNAVEDWIENVLGRIFNKALQKYQPEPRHSMKLVTCEGIFMEEQAPGVCLPTNVNLK 1090
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju08g1559 1090 SUPERFAMILY Double Clp-N motif 12 118 IPR036628 -
Alju08g1559 1090 ProSiteProfiles Clp repeat (R) domain profile. 8 178 IPR004176 -
Alju08g1559 1090 CDD RecA-like_ClpB_Hsp104-like 693 868 - -
Alju08g1559 1090 MobiDBLite consensus disorder prediction 574 599 - -
Alju08g1559 1090 Gene3D - 683 986 IPR027417 -
Alju08g1559 1090 Pfam AAA domain (Cdc48 subfamily) 740 864 IPR003959 GO:0005524|GO:0016887
Alju08g1559 1090 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 690 1027 IPR027417 -
Alju08g1559 1090 Gene3D - 10 173 IPR036628 -
Alju08g1559 1090 PANTHER CHAPERONE PROTEIN CLPD, CHLOROPLASTIC 1 1049 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju08g1559 Alju-ChrAlju08 12279565 12284052 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju08g1559 08 12279565 12284052 Alju07g0757 07 12274287 12278722 CCT
Alju08g1559 08 12279565 12284052 Alju08g1559 08 12279565 12284052 ECH
Alju08g1559 08 12279565 12284052 Alju07g1563 07 41781706 41787670 ECH
Alju08g1559 08 12279565 12284052 Alju07g0757 07 12274287 12278722 ECH
Alju07g1563 07 41781706 41787670 Alju08g1559 08 12279565 12284052 ECH