Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip08g00375 ATGGCTGAGAAGCAGAAACCGTCTTCCTCAACATCATCAGGGGATTGGAGGAGAATACCACTTTGCACTTTCTTTAAGGATACCAGACAAGTTTTCAAATTAGATAGTCTTGGTCGTGAAATATTGTCTATTGCACTGCCTGCAGCAATGGCTTTGACAGCAGACCCCATAGCTTCACTGGTTGACACAGCATTCATAGGCCGAATCGGTGCAGTGGAGCTTGCTGCTGTAGGAGTTTCAATAGCTCTCTTCAATCAAGTGTCAAGGATTGCAATATTCCCCCTTGTCAGTTGCACAACCTCTTTTGTGGCTGAGGAAGACAGCATCACCGGAGCAAGTCCTCCGGTAGATGAAAGCGAAACCATGGAAGCAGGTCCACCCTCTGATGCTGAAACCAAAGAGTTCCTACCCCAGAAAGGTACCATTGTTGGAAGTATTCAGAAACTAGATTTGGCTGGTGAAAGCTTTGACACAGTTGAGGAGGCGCAACAAAAGAAAAGGCATATCCCTTCGGCTTCATCTGCAATATTTATCGGCGGCATCCTTGGCCTCATCCAGGCAGTACTACTTATATCTGCAGCAAAACCTTTATTGAACTTCATGGGAGTAGCTTCTGACTCTCCTATGCTACACCCTGCGCAACGGTACCTGACACTGCGGTCCCTTGGTGCTCCTGCGGTTCTTCTTTCGTTGGCGATGCAGGGAGTCTTCAGAGGATTTAAGGACACTAGAACTCCTCTATATGCTACTGTGGCTGGAGATGTTACCAATATAGCATTAGATCCTTTATTCATGTTTGTATTTCGCTTAGGCGTCAGCGGTGCAGCCATTGCCCATGTTATATCTCAGTACCTTATTTCAGTTATACTTCTATGGAGGTTGATGGAACAAGTTGATCTTATTCCTCCAAGCATCAAGCATTTGAGATTTGACCGATTTCTTAGAAATGGTTTCCTATTGTTAATGAGAGTCATTGCTGTAACATTCTGTGTGACACTGGCCGCGTCTTTAGCTGCGCGCCACGGATCAACATCCATGGCAGCTTTTCAAGTGTGCCTACAGATTTGGCTGGCAGTGTCTCTTCTGGCTGATGGTCTGGCTGTTGCTGGGCAGGCTATTCTTGCGGGTGCATTTGCTAATAAGGACTATGAGAAGGCCACAACAACTGCTTCGCGAGTATTGCAGATGGGATTGGTTCTAGGTGTGGGACTTGCATTTATTCTTGGAACAGGATTGCACTTTGGAGCTAAGCTGTTTACTGAAGATGTTAAAGTCCTCCATCTCATTAGAATGGGGATACCGTTTGTAGCATTAACACAACCCCTGAACTCATTGGCATTTGTATTTGATGGTGTCAACTTTGGAGCATCTGATTTCGCATATTCAGCCTTCTCTATGATTGTGGTGGCCATCATTAGCATAGTATGTTTACTTATCATGTCATCTGCTGGTGGTTTCATTGGAATATGGATTGCTTTGACAATTTATATGTCTCTTAGGGCCTTTGCTGGCTTCTTGAGGATTGGAACAGGATCAGGACCTTGGGAATTCCTATGGAGATGA 1563 0.4517 MAEKQKPSSSTSSGDWRRIPLCTFFKDTRQVFKLDSLGREILSIALPAAMALTADPIASLVDTAFIGRIGAVELAAVGVSIALFNQVSRIAIFPLVSCTTSFVAEEDSITGASPPVDESETMEAGPPSDAETKEFLPQKGTIVGSIQKLDLAGESFDTVEEAQQKKRHIPSASSAIFIGGILGLIQAVLLISAAKPLLNFMGVASDSPMLHPAQRYLTLRSLGAPAVLLSLAMQGVFRGFKDTRTPLYATVAGDVTNIALDPLFMFVFRLGVSGAAIAHVISQYLISVILLWRLMEQVDLIPPSIKHLRFDRFLRNGFLLLMRVIAVTFCVTLAASLAARHGSTSMAAFQVCLQIWLAVSLLADGLAVAGQAILAGAFANKDYEKATTTASRVLQMGLVLGVGLAFILGTGLHFGAKLFTEDVKVLHLIRMGIPFVALTQPLNSLAFVFDGVNFGASDFAYSAFSMIVVAIISIVCLLIMSSAGGFIGIWIALTIYMSLRAFAGFLRIGTGSGPWEFLWR 520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip08g00375 520 Pfam MatE 322 475 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Aip08g00375 520 Pfam MatE 166 263 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Aip08g00375 520 PANTHER PROTEIN DETOXIFICATION 43 15 119 - -
Aip08g00375 520 PANTHER PROTEIN DETOXIFICATION 43 127 518 - -
Aip08g00375 520 CDD MATE_DinF_like 37 510 IPR044644 -
Aip08g00375 520 TIGRFAM matE: MATE efflux family protein 47 490 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Aip08g00375 520 MobiDBLite consensus disorder prediction 109 133 - -
Aip08g00375 520 PANTHER PROTEIN DETOXIFICATION 44, CHLOROPLASTIC-RELATED 15 119 IPR044644 -
Aip08g00375 520 PANTHER PROTEIN DETOXIFICATION 44, CHLOROPLASTIC-RELATED 127 518 IPR044644 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip08g00375 Aip-Chr8 2892911 2897431 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip08g00375 K03327 - gmx:100780165 833.558
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip08g00375 08 2892911 2897431 Aip08g00375 08 2892911 2897431 ECH
Aip08g00375 08 2892911 2897431 Aip03g00567 03 5501716 5505359 ECH
Aip02g01776 02 77323264 77330854 Aip08g00375 08 2892911 2897431 ECH
Aip08g00375 08 2892911 2897431 Aip03g00567 03 5501716 5505359 PCT