Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g00567 ATGGCTGACAAACTCATTTCAACACAAGTTTGCAGTTTATTTAGGGACACCAGACTTGTTTTCAAAGCAGACAACCTTGGTTGGGAAATATTGTCAATTGCAGTGCCTTCTGCTATGGCTTTGACAGCTGATCCTATTGCTTCACTGGTTGACACAGCATTCATTGGCCGAATAGGTGCAGTGGAGCTTGCTGCTGTAGGAGTATCCATAGCTCTCTTCAATCAAATATCGAGGATTGCAATTTTCCCACTCGTCAGTGTGACTACTTCTTTTGTGGCTGAGGAAGATGCCCTTACAGCAGCCAGCCCTCTGGTAGAGGATAGTGAATCCTTGGAAGAAGGTTCCATTCTGAAAGCTGAAATCAATGAACTTATACCAGATAAAGATGGAGATGTTCAGAAACCAGATTTGATCCATATGGACTCAAATGTAGTTAAGGTTGAGCATAAGAGAAGGCATATCCCTTCTGCATCATCAGCATTGGTAATTGGTGGTATTCTTGGCCTTGTCCAGGCAATATTCCTCATATTTGCAGCAAAACCTTTATTGCACTTCATGGGAGTAAATTATGACTCTCCCATGCTCAAACCTGCACAGAACTACCTGACATTGAGATCTCTTGGCGCGCCGGCTGTTCTTCTCTCGTTAGCAATGCAGGGAGTCTTCCGAGGATTTAAAGACACTAAAACACCTCTATATGCTACTTTGGCAGGAGATTTGACCAACATAGCACTGGATCCTTTGTTCATGTTTGTATTCCGCTTAGGTGTTAGTGGTGCAGCCATTGCTCATGTTATATCTCAGTACCTAATTTCTGTAATACTCCTGTGGAAATTGATGCAAAAAGTTGATCTTATGCCTCCCAGCATCAAGCATCTGCAGTTTGATCGATTTCTCAAAAATGGTTTTCTGTTGTTATTGAGAGTAACTGCTGTAACATTCTGTGTCACTCTGGCCGCCTCACTAGCTGCACGCCAGGGATCAAAATCTATGGCTGCATTTCAAGTCTGCCTGCAGATTTGGCTGGCAGTATCTCTTCTTGCCGATGGTCTTGCTGTTGCTGGGCAGGCAATTCTTGCAGGCGCATTTGCTGCCAAGGACTATGACAAGGCCACTGCGACTGCAGCTCGAGTATTACAGATGGGTTTGGTTCTGGGATTGGCTCTTGCATTCATTCTTGGTGCAGGACTTCCTTTTGGAGCTAAACTATTTACAAGAGATGTTGATGTCCTCCACCTCATAAAAATTGGAATACCTTTTGTTGCAGCCACCCAACCCATCAATGCTTTGGCATTTGTATTTGATGGTATCAACTTTGGTGCATCTGACTTTGCATATTCAGCATTCTCTTTGCTTATAGTGGCAGTTGTCAGCATCATTTGCCTACTATTTTTATCAGCATCATTCATAGGAATTTGGGTTGCTTTGACCATCTATATGGGTCTTAGAGCATTTGCTGGCTTCTTGAGGATTGGAACAGGATCAGGACCTTGGAAGATCCTTAGGAAGTGA 1512 0.4345 MADKLISTQVCSLFRDTRLVFKADNLGWEILSIAVPSAMALTADPIASLVDTAFIGRIGAVELAAVGVSIALFNQISRIAIFPLVSVTTSFVAEEDALTAASPLVEDSESLEEGSILKAEINELIPDKDGDVQKPDLIHMDSNVVKVEHKRRHIPSASSALVIGGILGLVQAIFLIFAAKPLLHFMGVNYDSPMLKPAQNYLTLRSLGAPAVLLSLAMQGVFRGFKDTKTPLYATLAGDLTNIALDPLFMFVFRLGVSGAAIAHVISQYLISVILLWKLMQKVDLMPPSIKHLQFDRFLKNGFLLLLRVTAVTFCVTLAASLAARQGSKSMAAFQVCLQIWLAVSLLADGLAVAGQAILAGAFAAKDYDKATATAARVLQMGLVLGLALAFILGAGLPFGAKLFTRDVDVLHLIKIGIPFVAATQPINALAFVFDGINFGASDFAYSAFSLLIVAVVSIICLLFLSASFIGIWVALTIYMGLRAFAGFLRIGTGSGPWKILRK 503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g00567 503 PANTHER PROTEIN DETOXIFICATION 10 502 - -
Aip03g00567 503 Pfam MatE 310 460 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Aip03g00567 503 Pfam MatE 156 248 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Aip03g00567 503 PANTHER PROTEIN DETOXIFICATION 44, CHLOROPLASTIC-RELATED 10 502 IPR044644 -
Aip03g00567 503 CDD MATE_DinF_like 26 493 IPR044644 -
Aip03g00567 503 TIGRFAM matE: MATE efflux family protein 36 473 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g00567 Aip-Chr3 5501716 5505359 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g00567 K03327 - gmx:100780165 731.865
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip03g00567 03 5501716 5505359 Aip03g00567 03 5501716 5505359 ECH
Aip08g00375 08 2892911 2897431 Aip03g00567 03 5501716 5505359 ECH
Aip02g01776 02 77323264 77330854 Aip03g00567 03 5501716 5505359 ECH
Aip08g00375 08 2892911 2897431 Aip03g00567 03 5501716 5505359 PCT