Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip08g00188 ATGGCTCCCTGTGGAGAGAGTTTCCCAAACCCTAATTTTGGTAGGAACAATATTGCCAAGCCACCGAAGCAGTCACTATGTAATAACAATCATATTCAAAGAACCTTCTCAGACATCTCGTTCGAGCTCGCGAAAGAAGAGATCAATGATTTGAAGACACTTACGCCCATAAGTGAGGTAGAGGATGCAAAGTGCGAGTGTTGTGGCATGTCGGAAGAGTGCACGCCGGAGTACATAGGCCGCGTTCGTGGCAAATTCTCCGGCAAGTTTGTGTGCGGGTTGTGTTCGGAGGCGGTGAAGGAAGAGTTGGAGAAGAACGGAGGGAAGAAGGAGGAAGCACTGAACTCACACATCAATGCTTGTGTTAGGTTCAACAAGTATGGTAGGGCTTTCCCTGTTTTGTTCCAAGCTGAAGCCATGAAAGCCATGTTGAAGAAGAACAAAATGGAAGGGAGAAGGGCTAAAAGAGGCATATCAAAGGGCAAGCTCGTGATGGATCTAAACATGTTCCTCAAGCGCCGCCGCAAGCTCGCCGGAAAAGCCATCTACAACCTCATGTTCCATCACCACCACCACTCAAACAACCCTAATCTACAGTTCTCCGCCCCAAGGGAGTACGAGTTCAGCTGCAGCAACACTCCCAACAACCACTACTTCTTCCCAATCGGCAAGCGCCACCGCAATCACAACCACCACTTCTTCGCATGCGCTCACGCGCCACCCACTCTCGACGACGACGTGGTCACCGCGAACGCGCTCAAGGCGGTGTTGGAGATCTTGAACAACAACAACAATAATAATGATCAGGTGATGATGGCTATGGTGGAGGCTTCGCCGGCGCTTCCAGGGTTCGGCCGGAGTCCAATGGTGAGGCAGCTGAGAGTGACGGACTCGCCGTTCCCGCTTCATAACGACGACAAAGACGACCACCAGGTTGATAAGGCGGCGGAAGAGTTCATCAAGAGGTTCTACACCGAGTTAAGGAAGCAAGATTAG 996 0.511 MAPCGESFPNPNFGRNNIAKPPKQSLCNNNHIQRTFSDISFELAKEEINDLKTLTPISEVEDAKCECCGMSEECTPEYIGRVRGKFSGKFVCGLCSEAVKEELEKNGGKKEEALNSHINACVRFNKYGRAFPVLFQAEAMKAMLKKNKMEGRRAKRGISKGKLVMDLNMFLKRRRKLAGKAIYNLMFHHHHHSNNPNLQFSAPREYEFSCSNTPNNHYFFPIGKRHRNHNHHFFACAHAPPTLDDDVVTANALKAVLEILNNNNNNNDQVMMAMVEASPALPGFGRSPMVRQLRVTDSPFPLHNDDKDDHQVDKAAEEFIKRFYTELRKQD 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip08g00188 331 Coils Coil 327 331 - -
Aip08g00188 331 Pfam Cotton fibre expressed protein 310 330 IPR008480 -
Aip08g00188 331 Pfam Protein of unknown function (DUF1677) 60 146 IPR012876 -
Aip08g00188 331 PANTHER OS01G0745000 PROTEIN 2 156 IPR012876 -
Aip08g00188 331 PANTHER CASP-LIKE PROTEIN (DUF1677) 2 156 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip08g00188 Aip-Chr8 1241332 1244299 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip08g00188 - - adu:107458944 304.293
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip09g00417 09 4345235 4346132 Aip08g00188 08 1241332 1244299 ECH
Aip05g03283 05 138412733 138414112 Aip08g00188 08 1241332 1244299 ECH
Aip08g00188 08 1241332 1244299 Aip08g00188 08 1241332 1244299 ECH
Aip08g00188 08 1241332 1244299 Aip09g00417 09 4345235 4346132 PCT