Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip07g02542 ATGTCAGGGCGCCTTTGTATTGAAGAAGTAGCAGGGCAGGATGAAAGAAGAGAGCATTCAGAGGATGAAAGAAAGACAGCAATATACAGTCTGAAAAAGAAGGCAATAAATGCATCGAACAAGTTGAGGCATTCTTTTAAGAAGAAAAGAAGCAAAAAGAGTGCCAGCCGGAGTAATTCCCTGTCCATTGAGGATGTTCGAGACGCAAAGGAGCTTCAATCAGTCGATGTATTTCGACAGGCACTTATATCTGATAACTTGCTTCCCGCCAAACACGATGATTATCACACGTTATTGAGATTCTTGAAAGCCAGGAAGTTTGACATTGAGAAAGCAAAACACATGTGGGCCAACATGATACAATGGAGGAAAGACTATGGTACAGATACAATTATAGAGGATTTTGAGTTCAAGGAATTGCATGAAGTCCAGCAGTACTATCCACACGGTAATCATGGCGTAGATAAGGAAGGAAGACCTGTTTATATTGAAAGACTAGGCAAAGTTGATCCCAGCAAACTTATGCAAGTAACTAATATTGAAAGGTACTTGAGATACCATGTGCAGGGTTTTGAGAAAACATTTGCTGTTAAGTTTCCAGCTTGCTCAATAGCTGCTAAGAGACATATAGATTCAAGCACAACCATATTGGATGTTCAAGGCCTGGGTTTCAAAAATCTAACCAAGTCTGCACGGGAACTCATCACGCGCCTGCAGAAGATTGATGGTGATTACTATCCAGAAACACTCTACCAAATGTTTATCATCAATGCTGGCCCTGGTTTCAAGATGCTTTGGAACACGGTGAAAACATTCCTAGATCCCAAAACCACGTCAAAAATTCAAGTTCTCGGAAACAAGTTCCAGAGTAAATTACTTGAAGTTATTGATGCGAGTGAGCTGCCAGAATTTCTTGGTGGTACTTGCACTTGTGCTGATCGGGATGGTTGTATGAGATCTGATAAAGGGCCATGGCAAGACCCAAACATTATAAAGATGGTTCTCAATGGTGAAGTACATTGCTCTAGACAAATAGTAACAGATACTAACGATAAGGCGACCGCATTCGAATGCGATAGGACATCTTATCCAATGATAAGAAGTTGTGATACACCTACAGGAGAGTCAGGGTCTGAAGTTGACGAAATTACATCTCCCAAAGCAAGTGGGAATCATATAAACCCTATCTTGACTCCAGTGCATGAAGAAGCAAGACTGGTTGGAAAGGCTAATCATGCTGCTAAGGGTTTCTCTGAGCATGATGAGTATATACCAATGGTTGACAAGGCTGTGGATGTTGGCTGGAAGGAAAAGCAAGCAACATCTCAAAACTCATCTGCCTCAACAACAGAAAAATTTCTATCGAGTAATGAAAAATGTCCTGATGGAAACCGAGCATATATCTGGACTGTCATAATGAGCTTCTTCTTAGCCCTCGTTACTTTTGCCCGTTCGATAGCATTTGGTGGTGTTAAAGGAATACTGAGGCATGAATCTAATTCTTCTCAAAGTATAACAAGCATGACTGTTGATTCAGTGTCTATGGAAGAATCTGGTACTCCTTCACCTGCTCCTGAGTTCACAGAGACAAACCTCCCCGCATCAGCCTTGAAACGCCTTGGCGAGCTTGAAGAGAAAGTTAACATGCTACAATCAAAATCTAATGTGATGACATATGAGAAAGAGGAGCAGCTGAATGCTGCAGTTTATCGAGTTGATGCATTGGAATCAGAGTTGATTGCTACAAAGAAGGCTCTATACGAAGCTTTGATAAAACAAGAAGAATTAATGGAATACATAGAAAGACAGGACAAACACAAAAGCATGTGGAAAAAGGTTTGCTGTTGA 1848 0.4096 MSGRLCIEEVAGQDERREHSEDERKTAIYSLKKKAINASNKLRHSFKKKRSKKSASRSNSLSIEDVRDAKELQSVDVFRQALISDNLLPAKHDDYHTLLRFLKARKFDIEKAKHMWANMIQWRKDYGTDTIIEDFEFKELHEVQQYYPHGNHGVDKEGRPVYIERLGKVDPSKLMQVTNIERYLRYHVQGFEKTFAVKFPACSIAAKRHIDSSTTILDVQGLGFKNLTKSARELITRLQKIDGDYYPETLYQMFIINAGPGFKMLWNTVKTFLDPKTTSKIQVLGNKFQSKLLEVIDASELPEFLGGTCTCADRDGCMRSDKGPWQDPNIIKMVLNGEVHCSRQIVTDTNDKATAFECDRTSYPMIRSCDTPTGESGSEVDEITSPKASGNHINPILTPVHEEARLVGKANHAAKGFSEHDEYIPMVDKAVDVGWKEKQATSQNSSASTTEKFLSSNEKCPDGNRAYIWTVIMSFFLALVTFARSIAFGGVKGILRHESNSSQSITSMTVDSVSMEESGTPSPAPEFTETNLPASALKRLGELEEKVNMLQSKSNVMTYEKEEQLNAAVYRVDALESELIATKKALYEALIKQEELMEYIERQDKHKSMWKKVCC 615
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip07g02542 615 Pfam CRAL/TRIO domain 145 307 IPR001251 -
Aip07g02542 615 Gene3D - 34 126 - -
Aip07g02542 615 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 139 313 IPR001251 -
Aip07g02542 615 SUPERFAMILY CRAL/TRIO N-terminal domain 68 135 IPR036273 -
Aip07g02542 615 SMART CRAL_TRIO_N_2 94 119 IPR011074 -
Aip07g02542 615 SUPERFAMILY CRAL/TRIO domain 139 332 IPR036865 -
Aip07g02542 615 MobiDBLite consensus disorder prediction 367 394 - -
Aip07g02542 615 MobiDBLite consensus disorder prediction 42 62 - -
Aip07g02542 615 PRINTS Cellular retinaldehyde-binding protein signature 97 119 - -
Aip07g02542 615 PRINTS Cellular retinaldehyde-binding protein signature 266 285 - -
Aip07g02542 615 PRINTS Cellular retinaldehyde-binding protein signature 299 308 - -
Aip07g02542 615 Gene3D - 127 338 IPR036865 -
Aip07g02542 615 MobiDBLite consensus disorder prediction 367 392 - -
Aip07g02542 615 PANTHER CELLULAR RETINALDEHYDE BINDING/ALPHA-TOCOPHEROL TRANSPORT, CRAL/TRIO-RELATED 12 611 - -
Aip07g02542 615 Pfam CRAL/TRIO, N-terminal domain 92 118 IPR011074 -
Aip07g02542 615 CDD SEC14 140 308 IPR001251 -
Aip07g02542 615 SMART sec14_4 139 310 IPR001251 -
Aip07g02542 615 PANTHER CRAL-TRIO DOMAIN-CONTAINING PROTEIN YKL091C-RELATED 12 611 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip07g02542 Aip-Chr7 105958732 105963086 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip07g02542 98 304 Acyl Lipid Metabolism Gene Families AT5G47730 31.579 3.33e-20 90.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip07g02542 - - gmx:100812774 876.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip05g00852 05 11612871 11616907 Aip07g02542 07 105958732 105963086 ECH
Aip07g02542 07 105958732 105963086 Aip07g02542 07 105958732 105963086 ECH
Aip03g00772 03 7458332 7463214 Aip07g02542 07 105958732 105963086 ECH