Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g00852 ATGTCTGGACCCAACTCCCCCCGGACGAACTCTATGAGGAAGAAAGCCATGAATGCATCAAACGGGCTGAGGAATTCTCTGACGAAAAAGGGCAGGCGGAGCAGCAAGGTTATGTCCATTGAAATTGAGGACGTCCACGATGAGGAGGAGATGAAACATGTCGACGAGTTCCGCCAAGCTCTTATCTTGGATGAACTACTTCCTGCAAAGCACGATGATTATCACATGATGCTTAGATTCCTCAAGGCGAGGAAATTTGATATCGAGAAAACAAAGCTAATGTGGTCTAACATGCTCAAGTGGAGGAAGGAATTTGGTTCAGACACTATTGTAGAGGAGTTTGAATTCAAGGAAATCAATGAAGTGATTAAGTATTATCCGCATGGACACCATGGAGTGGACAAAGATGGACGTCCTGTGTATATAGAAAGATTGGGACAAGTGGATGCCACCAAGCTGATGCAAGTCACAACCATGGATCGTTACATCAAGTACCATGTCCAAGAGTTTGAGAAGACTTTTGATATCAAGTTTCCAGCTTGCTCCATTGCTGCAAGGAAGCAAATCGACCAAAGTACAACAATCCTTGATGTCCAAGGAGTGGGTCTTAAAAACTTCAACAAGAATGCTAGGGAACTTGTCACTCGCCTTCAGCAGATTGACGGTGACAACTATCCAGAGACCTTGAATCGCATGTTCATCATCAATGCAGGTTCCGGGTTTAGAATTTTGTGGAACACTGTAAAATCCTTCCTTGACCCTAAGACTACAGCGAAAATCCATGTTCTTGGTAACAAGTATGATACTAAATTGCTTGAAATAATCGATGCAAATCAATTGCCTGAGTTTTTAGGAGGCAGTTGTACCTGTCCTGGAGTTGAAGGAGGTTGTATGCGTTCTGATAAGGGTCCATGGAAGGATCCAGAAATAATGAAGATGGTTCAAAATGGTGATCACAAATGTTCGAAAGGGAAAGGGTCTCAAGCTGAGGAGGAGAAACATGTGGAGGAATCCAAGCCTATGTCCAGGTTGGGAAGTCTCAGCAAACAAGCCTCTTCACTTAGTGATAAGGGAAACAAGAGTTTCAAGGGGGAAGCGGCTCTCACCAAACAAGTTTCTTCACTTAGTGATAAGGCCGCAGCGAATAAAAAGGTCCAAGAGAGCCAGGCTGCTCAAGCAAAAACGACACAGCAGGCTCTTGTGGTTGCGGTTAAAACCAAGAAGCATGAGGACATTATCCCCGTGATTGACAAAACAGTGACAAAAAAGATTGACAAAGTTGACAAAACTACAGCATCTAAAGAGTTCACCACTGTGATGAAGCGGATGGCTGAGTTGGAAGAGAGAATGCACAACATGAACCAAAAGTCTGCTGCCTTGCCCCCTGAGAAGGAGCAGTTGCTCAACTCCGCTATCTCCCGCGCCGACAACCTTGAGAAACAACTCATGGAAACCAAGAAGCAATTGGAGGATTCACTCAGCAAGCAAGAGGAGCTCTCTGCTTACATTGAGAAGAAGAAGAGAAAGAAGAAGAAGATGATATTCTTTTGA 1551 0.4423 MSGPNSPRTNSMRKKAMNASNGLRNSLTKKGRRSSKVMSIEIEDVHDEEEMKHVDEFRQALILDELLPAKHDDYHMMLRFLKARKFDIEKTKLMWSNMLKWRKEFGSDTIVEEFEFKEINEVIKYYPHGHHGVDKDGRPVYIERLGQVDATKLMQVTTMDRYIKYHVQEFEKTFDIKFPACSIAARKQIDQSTTILDVQGVGLKNFNKNARELVTRLQQIDGDNYPETLNRMFIINAGSGFRILWNTVKSFLDPKTTAKIHVLGNKYDTKLLEIIDANQLPEFLGGSCTCPGVEGGCMRSDKGPWKDPEIMKMVQNGDHKCSKGKGSQAEEEKHVEESKPMSRLGSLSKQASSLSDKGNKSFKGEAALTKQVSSLSDKAAANKKVQESQAAQAKTTQQALVVAVKTKKHEDIIPVIDKTVTKKIDKVDKTTASKEFTTVMKRMAELEERMHNMNQKSAALPPEKEQLLNSAISRADNLEKQLMETKKQLEDSLSKQEELSAYIEKKKRKKKKMIFF 516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g00852 516 MobiDBLite consensus disorder prediction 1 35 - -
Aip05g00852 516 MobiDBLite consensus disorder prediction 317 360 - -
Aip05g00852 516 SMART sec14_4 118 289 IPR001251 -
Aip05g00852 516 Pfam CRAL/TRIO domain 125 286 IPR001251 -
Aip05g00852 516 Gene3D - 106 319 IPR036865 -
Aip05g00852 516 PANTHER PHOSPHATIDYLINOSITOL/PHOSPHATIDYLCHOLINE TRANSFER PROTEIN SFH10-RELATED 421 512 - -
Aip05g00852 516 PANTHER PHOSPHATIDYLINOSITOL/PHOSPHATIDYLCHOLINE TRANSFER PROTEIN SFH10-RELATED 6 403 - -
Aip05g00852 516 PRINTS Cellular retinaldehyde-binding protein signature 76 98 - -
Aip05g00852 516 PRINTS Cellular retinaldehyde-binding protein signature 245 264 - -
Aip05g00852 516 PRINTS Cellular retinaldehyde-binding protein signature 278 287 - -
Aip05g00852 516 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 118 292 IPR001251 -
Aip05g00852 516 Gene3D - 26 105 - -
Aip05g00852 516 SMART CRAL_TRIO_N_2 73 98 IPR011074 -
Aip05g00852 516 SUPERFAMILY CRAL/TRIO N-terminal domain 47 113 IPR036273 -
Aip05g00852 516 MobiDBLite consensus disorder prediction 1 28 - -
Aip05g00852 516 MobiDBLite consensus disorder prediction 317 340 - -
Aip05g00852 516 CDD SEC14 116 286 IPR001251 -
Aip05g00852 516 MobiDBLite consensus disorder prediction 343 359 - -
Aip05g00852 516 Coils Coil 468 499 - -
Aip05g00852 516 Coils Coil 436 456 - -
Aip05g00852 516 SUPERFAMILY CRAL/TRIO domain 118 315 IPR036865 -
Aip05g00852 516 PANTHER CRAL-TRIO DOMAIN-CONTAINING PROTEIN YKL091C-RELATED 421 512 - -
Aip05g00852 516 PANTHER CRAL-TRIO DOMAIN-CONTAINING PROTEIN YKL091C-RELATED 6 403 - -
Aip05g00852 516 Pfam CRAL/TRIO, N-terminal domain 46 97 IPR011074 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g00852 Aip-Chr5 11612871 11616907 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip05g00852 79 283 Acyl Lipid Metabolism Gene Families AT5G47730 29.717 1.22e-19 88.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g00852 - - adu:107487987 855.129
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip05g00852 05 11612871 11616907 Aip07g02542 07 105958732 105963086 ECH
Aip05g00852 05 11612871 11616907 Aip05g00852 05 11612871 11616907 ECH
Aip03g00772 03 7458332 7463214 Aip05g00852 05 11612871 11616907 ECH