Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g00772 ATGTGTGACACTTTGTCATCTTTATCTAATCCAGATCGACCTTATAAAGTTGGTGTTGAAATTGAATTAATGGAGGATGATGAAAAGAAGCCAAGGAGGCTTGGGTCATTGAAGAAGGTAGCAATGAATGCATCTTCAAAGTTTAGACATACATTAACAAAGAAAGGAAGGAAGCATAGTAGGGTTATGTCTATTATTGATGATCATCTTAATTCAGAAGACTTGCAAGCCGTTAACACTCTGCGCCAAGCACTTGTTCAGGATGATCTTTTACCCCCAAAATTTGATGATCACCATTTGATGCTAAGATTCTTGAAAGCAAGAAAATTCGACATTGAGAAAACAAAGCAAATGTGGGGAGATATGCTTGTGTGGAGAAAGGAGTTTGGTGCTGATACAATTATGGAGGATTTTGAATTCAAGGAGATAGATGAAGTAATGAAATACTACCCACAAGGGCATCATGGAGTTGATAAAGAAGGAAGACCAGTGTACATTGAAAGAATAGGTCAAGTTGACTCCAACAAGCTAATGCAAGTCACAACAATGGACCGTTATCTTAAATATCATGTTAAAGAGTATGAGAGAACATTTTCACTTAAATTCCCTGCTTGCTCAATCGCTGCAAGAAAACACACTGATCAAAGCACTGCTATCTTGGATGTCGAAGGAGTGGGTCTTAAAAGTTTTAACAAAGCTGCAAGGGACCTTGTCCAACGACTTCAAAAGATTGATGGTGATAACTATCCTGAGACCTTGCATCGCATGTATATCATTAATGCCGGTTCTGGATTTAGATTGCTATGGAATACTGTTAAGTCATTCCTTGATCCCAAGACCACCGCAAAAATCAATGTCCTAGGTAACAAATACCAAAGCAAATTGCTTGAAGTCATTGATGCCAGTGAACTTCCAGAATTCTTTGGTGGTACTTGCAATTGTGAAGGTGGTTGCATGCTTTCTGACAAGGGTCCATGGAAAAGCCAAGAAATCTTGAAGGTGGTTCAAAAAAATGAGGAAAAAAGAATCAACAAAACCTTATCTGAAATTAAGGAGAAAATAATCATTGAAGATGAGACATTATACCAAAAGGAAAGTGATTCTCACAACAAAGAGTTAGTTAAGAAGGAAGTGCAATATGTGGTGCCAAAAGTGGAACATCCTGAAGCATCTCCAATTGCTGAAGTTGCAAAACAATGTAGTGCATATCAATATGATGCTTTTCTCCCAATGGTTGATAAGTCTATTAATGGATCTTGGAAGAAAACAGTAGAAAATGATCAATTTTCACTTTCTAAAGATTGTTACCCTGTCGATACTACTTCTTATGGTCGTTCAACTCAAGGTTTTGGTGGATTCATGGCCTTCATAATGGGAATCATTGCCATGATCCGCTTAACGAGGGCAATGCCGAAGAGAATCTGCCCCATGGCCGAGCATGATGATTGTAACCCGATTTATTATGACGGCACTGTGATGAAAGCACGTAACGTTTCCATGGAGGAGCAGATGGCGATGATGAGGCGCATGCTTGAACTAGAAGAGAAGGTGCAAGAACTCAGCAAGAGACCAGAAATGCCTCCAGAAAAAGAGTTGATTCTTAATAATGCTCTAAATAGAGTCAATATTCTTGAAGAAGAGTTAGACATGGCCAAAATGGCACTTGAAGCTGCACATCTTCGACTAGTAGAACTCCAAGCCTACATTGACAAAAAGAAGAAAAAGACACTGTTCCACTGGTGA 1743 0.389 MCDTLSSLSNPDRPYKVGVEIELMEDDEKKPRRLGSLKKVAMNASSKFRHTLTKKGRKHSRVMSIIDDHLNSEDLQAVNTLRQALVQDDLLPPKFDDHHLMLRFLKARKFDIEKTKQMWGDMLVWRKEFGADTIMEDFEFKEIDEVMKYYPQGHHGVDKEGRPVYIERIGQVDSNKLMQVTTMDRYLKYHVKEYERTFSLKFPACSIAARKHTDQSTAILDVEGVGLKSFNKAARDLVQRLQKIDGDNYPETLHRMYIINAGSGFRLLWNTVKSFLDPKTTAKINVLGNKYQSKLLEVIDASELPEFFGGTCNCEGGCMLSDKGPWKSQEILKVVQKNEEKRINKTLSEIKEKIIIEDETLYQKESDSHNKELVKKEVQYVVPKVEHPEASPIAEVAKQCSAYQYDAFLPMVDKSINGSWKKTVENDQFSLSKDCYPVDTTSYGRSTQGFGGFMAFIMGIIAMIRLTRAMPKRICPMAEHDDCNPIYYDGTVMKARNVSMEEQMAMMRRMLELEEKVQELSKRPEMPPEKELILNNALNRVNILEEELDMAKMALEAAHLRLVELQAYIDKKKKKTLFHW 580
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g00772 580 SMART CRAL_TRIO_N_2 97 122 IPR011074 -
Aip03g00772 580 CDD SEC14 140 311 IPR001251 -
Aip03g00772 580 PANTHER SEC14P-LIKE PHOSPHATIDYLINOSITOL TRANSFER FAMILY PROTEIN 11 576 - -
Aip03g00772 580 SUPERFAMILY CRAL/TRIO domain 142 336 IPR036865 -
Aip03g00772 580 PRINTS Cellular retinaldehyde-binding protein signature 100 122 - -
Aip03g00772 580 PRINTS Cellular retinaldehyde-binding protein signature 269 288 - -
Aip03g00772 580 PRINTS Cellular retinaldehyde-binding protein signature 302 311 - -
Aip03g00772 580 SMART sec14_4 142 313 IPR001251 -
Aip03g00772 580 Pfam CRAL/TRIO, N-terminal domain 96 119 IPR011074 -
Aip03g00772 580 SUPERFAMILY CRAL/TRIO N-terminal domain 68 138 IPR036273 -
Aip03g00772 580 Coils Coil 534 561 - -
Aip03g00772 580 Gene3D - 59 129 - -
Aip03g00772 580 PANTHER CRAL-TRIO DOMAIN-CONTAINING PROTEIN YKL091C-RELATED 11 576 - -
Aip03g00772 580 Pfam CRAL/TRIO domain 148 310 IPR001251 -
Aip03g00772 580 Gene3D - 130 340 IPR036865 -
Aip03g00772 580 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 142 316 IPR001251 -
Aip03g00772 580 Coils Coil 503 523 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g00772 Aip-Chr3 7458332 7463214 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g00772 103 307 Acyl Lipid Metabolism Gene Families AT5G47730 28.019 2.17e-17 82.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g00772 - - gmx:100792335 700.279
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip03g00772 03 7458332 7463214 Aip03g00772 03 7458332 7463214 ECH
Aip03g00772 03 7458332 7463214 Aip05g00852 05 11612871 11616907 ECH
Aip03g00772 03 7458332 7463214 Aip07g02542 07 105958732 105963086 ECH