Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g02728 ATGGCATCAAAAACAAGAGAAAGTGCAACAAGGTATGCAGTGGTGACAGGAGCAAACAAAGGAATAGGATTTGGGATATGTAAGCAATTGGCTTCTGATGGGATCACAGTGATCTTAACAGCAAGAGATGAAAAAAGTGGTCATGAAGCTCTTCAGAATCTCAAAGATTTAGGTTTATCTGGCCATATTCTTTTTCATCAGCTTGATGTCACTGATGCTAACAGCATAGCATCCCTTGTAAATTTCATCAAAATCCACTTCGGAAAACTTGATATCCTGGTGAATAATGCAGGAATCTTCGGTGCCGATGTTGACTACAGTGCTTTCGAAGTCTTACTTAGTGGTGTGGAGACTCATGATACTATTGATTGGAGAAAATATGAAACTCAAAATTATGAATTAGTAGAAGCAGCCATTAGAACAAACTACTATGGAGTCAAAGGAATGTGTGAAGCACTTATTCCCCTTCTAGAGTTGTCAGACTCGCCAAGAATCGTTGGTGTTTCCTCTTCCTTAGGGAAGTTGGAGAACCTACCAAATGGATGGGCTAAAGAAATTCTAAGTGATGCTGAAAGCTTAACAGAAGAAAAAGTAGATGAAGTTATGAATGAATATCTAAAGGATTTTGAAGAGGGTTTATTAGAAAGCAAAGAATGTTGGCCTCTAGCACATTCTGCATACATAGTCTCAAAAGCTGGTGTGAATGCATACACAAGGATTCTTGCAAAGAAGCATCCATGTTTTTGCATCAATGCTGTTTGTCCTGGCTATGTCAAAACTGATATCAACTACAATACTGGTCTTCTTAGTGTTGATGAAGTAGTGACAGGAGCAAACAAAGGGATAGGATTTGGAATATGTAAGCAATTGGCTTCTAATGGGATCACAGTGATCTTAACAGCAAGAGATGAGAAAAGGGGTCTTGAAGCTCTTCAGAATCTCAAAGATTTAGGTCTATCTGGCCATGTTGTTTATCATCAGCTTGATGTCACTGATGCTAACAGCATAGCATCCCTTGCAAATTTCATCAAAACCCAATTTGGAAAACTTGATATCTTGGTGAATAATGCAGGAATCCCTGGGACAGTCGTTGATGGCGATGCATTCAAAGCTTTACTTGCTTCTGGGGAAAGGGCTGATGCTATTGATTGGAGTAAAATTGTATGTCAAGATTATGAATCTGCAGAAGCAGGAATTAGAACTAACTATTATGGTGTCAAAGGAATGTGTGAAGCACTTATTCCCCTTCTACAATTGTCAGACTCACCAAAGATTGTCAATGTTTCCTCCTCCATGGGACAGTTGAAGAACCTACCAAATGAATGGGCTAAAGGAATTCTAAGTGATGACGAAAGCTTAACAGAAGAAAAAATTGATGAGGTTTTGAATCAATTTCTAAGTGATTTCAAAGAGGGTTCATTTGAAACCAAAGGATGGCCTCCTGCTTTTTCTGCATACATAGTTTCAAAAGCTGCTTTGAATGCATACACAAGAATTCTTGCAAAGAAGTATCCATCTTTCTGTATCAATTCTGTTTGTCCTGGTTTTGTCAAAACGGATATAAACTTCAACCTTGGTAACCTTAGTGTTGACGAAGGTGCCGAGAGCGCTGTAAGGTTGGCTCTGCTATCTAATGGGGTTTTTGTGCGCGCCTTGGTTGATGGTAGCTTCTCTCCGGCGATCTGCGTTCTCCTCCAGACCTCCACTCCTGCTGCTGCGTTGCGTGCAAGGGTTTGGTGCTAA 1743 0.3999 MASKTRESATRYAVVTGANKGIGFGICKQLASDGITVILTARDEKSGHEALQNLKDLGLSGHILFHQLDVTDANSIASLVNFIKIHFGKLDILVNNAGIFGADVDYSAFEVLLSGVETHDTIDWRKYETQNYELVEAAIRTNYYGVKGMCEALIPLLELSDSPRIVGVSSSLGKLENLPNGWAKEILSDAESLTEEKVDEVMNEYLKDFEEGLLESKECWPLAHSAYIVSKAGVNAYTRILAKKHPCFCINAVCPGYVKTDINYNTGLLSVDEVVTGANKGIGFGICKQLASNGITVILTARDEKRGLEALQNLKDLGLSGHVVYHQLDVTDANSIASLANFIKTQFGKLDILVNNAGIPGTVVDGDAFKALLASGERADAIDWSKIVCQDYESAEAGIRTNYYGVKGMCEALIPLLQLSDSPKIVNVSSSMGQLKNLPNEWAKGILSDDESLTEEKIDEVLNQFLSDFKEGSFETKGWPPAFSAYIVSKAALNAYTRILAKKYPSFCINSVCPGFVKTDINFNLGNLSVDEGAESAVRLALLSNGVFVRALVDGSFSPAICVLLQTSTPAAALRARVWC 580
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g02728 580 CDD carb_red_PTCR-like_SDR_c 274 543 IPR045313 GO:0016616
Aip04g02728 580 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 11 274 IPR036291 -
Aip04g02728 580 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 274 543 IPR036291 -
Aip04g02728 580 PANTHER (+)-NEOMENTHOL DEHYDROGENASE 7 273 - -
Aip04g02728 580 PANTHER (+)-NEOMENTHOL DEHYDROGENASE 274 546 - -
Aip04g02728 580 Gene3D - 2 274 - -
Aip04g02728 580 Gene3D - 275 552 - -
Aip04g02728 580 PANTHER SALUTARIDINE REDUCTASE-LIKE 7 273 - -
Aip04g02728 580 PANTHER SALUTARIDINE REDUCTASE-LIKE 274 546 - -
Aip04g02728 580 Pfam short chain dehydrogenase 274 435 IPR002347 -
Aip04g02728 580 Pfam short chain dehydrogenase 12 175 IPR002347 -
Aip04g02728 580 PRINTS Glucose/ribitol dehydrogenase family signature 486 505 IPR002347 -
Aip04g02728 580 PRINTS Glucose/ribitol dehydrogenase family signature 505 522 IPR002347 -
Aip04g02728 580 PRINTS Glucose/ribitol dehydrogenase family signature 348 359 IPR002347 -
Aip04g02728 580 PRINTS Glucose/ribitol dehydrogenase family signature 272 289 IPR002347 -
Aip04g02728 580 PRINTS Glucose/ribitol dehydrogenase family signature 417 433 IPR002347 -
Aip04g02728 580 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 486 505 IPR002347 -
Aip04g02728 580 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 423 431 IPR002347 -
Aip04g02728 580 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 348 359 IPR002347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g02728 Aip-Chr4 116951225 116989803 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip04g02728 274 526 Acyl Lipid Metabolism Gene Families AT1G24360 21.484 1.09e-07 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g02728 K15095 - rcu:8261843 645.58
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip04g02728 04 116951225 116989803 Aip04g02728 04 116951225 116989803 ECH
Aip04g02728 04 116951225 116989803 Aip02g00028 02 859435 862066 PCT
Aip02g00638 02 9540571 9543698 Aip04g02728 04 116951225 116989803 PCT