Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g03258 ATGGCAAATCACGGTCGAAGGAGTGTGTCATTGACCAACAGTCCCTCACGCCCTAAGAAGAAGAAAAACTTCTCTTCCGAGCTTTCATCCCCTGATATTCGAAAATCCTTTACTCCTCAACGCACGGGAGAGAGAACTGTGAGGTCATTAAGACTTTCAAGAGCATTGACAGTTCCCGACTCAACAAGTATTTCTGAAGCATGTCGTCGTATGGCTGCTCGCAAAGTCGATTCTCTTTTACTAACCGATTCGAATGCTTTGCTCTGTGGAATCCTGACGGACAAGGATATAGCTACAAGAGTTATTGCGCGCGAGGTTAATCTTGAAGATACACCCGTTTCCAAGGTTATGACAAGGAATCCAGTATTCGTCCTTTCCGATACTCTTGCTGTGGAAGCACTCCAAAAGATGGTTCAAGGAAAATTCAGGCATTTACCTGTGGTGGAAAATGGAGAAGTTGTTGCCATACTTGACATAGCAAAGTGTTTGTATGATGCCATTGCGCGTCTTGAAAGGGCAGCTGAGAAAGGAAAGGCAATTGCAGCGGCTGTTGAAGGTATCGAAAAACACTGGGGACCATCTGCTTCTGGCTCCAATTCCTCATTCTTGGAGACTCTTCGGGACCAGATATTCAAGCCTTCTTTGTCTACAATCATTCCTGAGAAATCAAAGGTTATAACAGTTTCACCAACGGACACAGTTTTGGCAACAACAAAGAAGATGCTTGAACTTCGTGTCAGTTGTGCTGTTGTCATGGTTGATGACAAACCTTGTGGTATCCTCACTTCAAAGGATATCTTGATGCGAGTAATAGCACAAAACCTTCCTGCATCAACAACTCTTGTTGAGAAGGCCATGACTCCAAATCCAGAATGTGCAAAAGTTGATACACCGATTGTTGATGCACTTCACACCATGCAAGATGGAAAATTTTTGCATCTTCCAGTGCTTGATAAAGCAGATGGCACTGTTGTTGCTATGCTTGATGTGATACATATTGCTCATGCTGCTATTGCAACAGCTGGTCAGGTTGGAAATACTGCCAATTTGAACACTGAAGCTGCCGACTCCATGATACAAAAGTTTTGGGATTCGGCCATATCCTTAAGCAGTCCAAATGATGATGACGATGACGATTCACGAAGTTCCTTGAAAATGGCTTCTGAGGGAAGAGAAATAGGGAGAACCACTCCTTTTAATGCAGCAAGCATGTTGCAGCAAGCATTTTCGTTCAAAGTACAAGATAGGAAAGGCAGACTTCATAGATTCACATGTGATACTCGGAGCTTGACAGAGGTTATAGCTTCCATTTCTCAGAAAGTTGATAATGACATTGACCCTGATAATAACCTGCCCCAGATTATGTATGAAGACGAAGAACATGATAAAATTGTACTAGCTTCAGACAGTGATCTTGCTGCAGCTGTGGAACACGCAAAGGCAGCTGGTTTAAAGGGATTAAGATTGCATTTAGAGTACTCGGGGCAAAATGATAACCAAAGAAGCTCTAGCAAGGAGAGTTTGTTGGCATACACAAACACAAGTTTAATGTGGCCCTCAACATATAGTGTGGTTGCAGCTGGAGCTGTAATCGTTGCTGGCTTAAGTCTATTAGCATTCTTCAGGCGAAGgtgtcgaccaagtttgtatcaagatctcaatttggggagcagatag 1677 0.4198 MANHGRRSVSLTNSPSRPKKKKNFSSELSSPDIRKSFTPQRTGERTVRSLRLSRALTVPDSTSISEACRRMAARKVDSLLLTDSNALLCGILTDKDIATRVIAREVNLEDTPVSKVMTRNPVFVLSDTLAVEALQKMVQGKFRHLPVVENGEVVAILDIAKCLYDAIARLERAAEKGKAIAAAVEGIEKHWGPSASGSNSSFLETLRDQIFKPSLSTIIPEKSKVITVSPTDTVLATTKKMLELRVSCAVVMVDDKPCGILTSKDILMRVIAQNLPASTTLVEKAMTPNPECAKVDTPIVDALHTMQDGKFLHLPVLDKADGTVVAMLDVIHIAHAAIATAGQVGNTANLNTEAADSMIQKFWDSAISLSSPNDDDDDDSRSSLKMASEGREIGRTTPFNAASMLQQAFSFKVQDRKGRLHRFTCDTRSLTEVIASISQKVDNDIDPDNNLPQIMYEDEEHDKIVLASDSDLAAAVEHAKAAGLKGLRLHLEYSGQNDNQRSSSKESLLAYTNTSLMWPSTYSVVAAGAVIVAGLSLLAFFRRRCRPSLYQDLNLGSR 558
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g03258 558 SMART PB1_new 408 494 IPR000270 GO:0005515
Aip03g03258 558 Pfam PB1 domain 409 492 IPR000270 GO:0005515
Aip03g03258 558 Pfam CBS domain 54 99 IPR000644 -
Aip03g03258 558 Pfam CBS domain 113 157 IPR000644 -
Aip03g03258 558 Pfam CBS domain 282 335 IPR000644 -
Aip03g03258 558 Pfam CBS domain 223 268 IPR000644 -
Aip03g03258 558 MobiDBLite consensus disorder prediction 1 48 - -
Aip03g03258 558 PANTHER CBS DOMAIN-CONTAINING PROTEIN CBSCBSPB4-RELATED 29 533 IPR034896 -
Aip03g03258 558 Gene3D - 28 182 IPR046342 -
Aip03g03258 558 MobiDBLite consensus disorder prediction 374 388 - -
Aip03g03258 558 Gene3D - 409 491 - -
Aip03g03258 558 MobiDBLite consensus disorder prediction 29 46 - -
Aip03g03258 558 MobiDBLite consensus disorder prediction 1 19 - -
Aip03g03258 558 SUPERFAMILY CBS-domain pair 44 160 IPR046342 -
Aip03g03258 558 ProSiteProfiles CBS domain profile. 51 111 IPR000644 -
Aip03g03258 558 ProSiteProfiles CBS domain profile. 286 344 IPR000644 -
Aip03g03258 558 ProSiteProfiles CBS domain profile. 117 175 IPR000644 -
Aip03g03258 558 SMART cbs_1 289 338 IPR000644 -
Aip03g03258 558 SMART cbs_1 224 271 IPR000644 -
Aip03g03258 558 SMART cbs_1 120 164 IPR000644 -
Aip03g03258 558 SMART cbs_1 54 102 IPR000644 -
Aip03g03258 558 MobiDBLite consensus disorder prediction 370 392 - -
Aip03g03258 558 ProSiteProfiles PB1 domain profile. 406 494 IPR000270 GO:0005515
Aip03g03258 558 CDD CBS_pair_MUG70_1 52 168 - -
Aip03g03258 558 SUPERFAMILY CAD & PB1 domains 399 496 - -
Aip03g03258 558 Gene3D - 213 341 IPR046342 -
Aip03g03258 558 PANTHER AMP-ACTIVATED PROTEIN KINASE, GAMMA REGULATORY SUBUNIT 29 533 - -
Aip03g03258 558 ProSiteProfiles CBS domain profile. 218 278 IPR000644 -
Aip03g03258 558 SUPERFAMILY CBS-domain pair 224 335 IPR046342 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g03258 Aip-Chr3 106299673 106303922 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g03258 - - adu:107479973 988.793
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip03g03258 03 106299673 106303922 Aip08g03195 08 122681779 122690835 PCT
Aip08g03341 08 124682425 124688422 Aip03g03258 03 106299673 106303922 PCT