Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip08g03341 ATGGCAAGTCAAAGTGGTGCGTCTCGAAGGAGCATAACGTCTGTTAGAAAATCCATTGATCATGGAGCTTCTCAATCTAATGCTCGAAAGTCTCTTTCTTCTTCGCGTCCCTTGGGACTGACGGCAGAGCGGACAGTAAAATCATTGCGTCTTTCAAAGGCTCTAACAGTACCTGAAACAACAACCATCTATGAAGCTTGTCGTCGCATGGCTGCTCGCAGATTAGATGCTATATTACTCACTGATTCAAATGCTTTGCTCTGTGGGATCCTTACAGACAAGGACATAACAAAAAGAGCTATTGCCTCAGAGCTTAGTCTTGAAGACACACCTGTTTCTAAGATTATGACAAAGAATCCAGTATTTGTCCTTTCTGAAACTCTTGCAGTGGAAGCCCTCCAAAAGATGGTGCAAGGCAAATTCAGACATTTACCTGTGGTGGACAATGGAGAAGTTGTTGCCATACTTGATATAGCAAAGTGCTTGTATGATGCTATTGCTCGTATGGAACGGGCAGCTGAGAAAGGAAAAGCAATTGCAGCAGCTGTTGAGGGTGTTGAAAAACAATGGGGATCATCTACTGCGGTCAATTCAACATTCATTGAGACTATTCGGGAACAGATATTTAAGCCATCATTGTCTACGATCATTCCTGAGAATTTAAAGGTTGTAACAGTTTCACCAACAGATTCTGTTTTGACAACTACGAAGAAGATGGTTGAACTTCATTCAAGTTCTGCTGTTGTGACAGTTGATGGCAAACCTCGCGGCATCCTTACTTCCAAGGATATATTGATGCGGGTAGTTGCGCAAAATCTTCCTCCAGTTTCAACTCCTGTTGAGAAGGTGATGACTCCTAATCCAGAATGTGCAGTTATTGATACACCAATAGTAGATGCACTTCACACTATGCATGATGGGAAATTTTTGCATCTTCCTGTGGTTGATAGAGATGGTGGGGTAGTTGCGGTGGTTGATGTGATTCATGTCACGCATGCTGCTGTTGCAACAGCAAGTCAGGTTGGAAACAATGAAGCTGCCAGCACCATGATGCAAAGATTCTGGGATTCGGCCATGGCCTTGACTCAAAATGATGATGATGACGAAACACGAAGGTTATATATGTTTATACGTATTGAGTTTTTTGGAAAAGTATTTCAAATTCTTTTGATGAAGGGCAGAATGCATAGATTCACATGTGATACACGGAGCATGACAGAGGTTATAACTTCAATCCTTCAGAGACTTGGTGATGATATTGACCCCAATAATCTACCCCAAATTCTGTATGAAGACGAAGATCATGATAAAGTCATATTGGCTTCAGACAGTGATCTTGCAGCAGCTGTAGACCATGCAAGGACAACTGGCATGAAGGGATTGAGATTGTACTTAGACTACTCTGGAACCGGAACCGGAACAGGAACAGGAACAGAAAAACGCATTCATGGGAGAGGTTCTGGTTCAGGGAGTTTGGATCATGCTACTAAAGATGCATGGGCCTCAGCATACAGTACCTATGCTGCTGGAGCTGCACTTGTTGCAGGCTTAGGCATATTAACATACTTGAAGCGACGTCATCAGCCCTGCATAGTGTACAAGAACAAACGGCATAACCACAAGTTTGTGTCCATTTTCTTCCCTCATCTATATTTGTGGCTGTTACTACTACATAATGTCTACCCCAGAAAATTCGGACTCACATCTTTTCTGAGATGA 1719 0.4264 MASQSGASRRSITSVRKSIDHGASQSNARKSLSSSRPLGLTAERTVKSLRLSKALTVPETTTIYEACRRMAARRLDAILLTDSNALLCGILTDKDITKRAIASELSLEDTPVSKIMTKNPVFVLSETLAVEALQKMVQGKFRHLPVVDNGEVVAILDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKQWGSSTAVNSTFIETIREQIFKPSLSTIIPENLKVVTVSPTDSVLTTTKKMVELHSSSAVVTVDGKPRGILTSKDILMRVVAQNLPPVSTPVEKVMTPNPECAVIDTPIVDALHTMHDGKFLHLPVVDRDGGVVAVVDVIHVTHAAVATASQVGNNEAASTMMQRFWDSAMALTQNDDDDETRRLYMFIRIEFFGKVFQILLMKGRMHRFTCDTRSMTEVITSILQRLGDDIDPNNLPQILYEDEDHDKVILASDSDLAAAVDHARTTGMKGLRLYLDYSGTGTGTGTGTEKRIHGRGSGSGSLDHATKDAWASAYSTYAAGAALVAGLGILTYLKRRHQPCIVYKNKRHNHKFVSIFFPHLYLWLLLLHNVYPRKFGLTSFLR 572
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip08g03341 572 CDD CBS_pair_MUG70_1 51 167 - -
Aip08g03341 572 Pfam PB1 domain 392 466 IPR000270 GO:0005515
Aip08g03341 572 Pfam CBS domain 112 156 IPR000644 -
Aip08g03341 572 Pfam CBS domain 280 330 IPR000644 -
Aip08g03341 572 Pfam CBS domain 52 98 IPR000644 -
Aip08g03341 572 Pfam CBS domain 222 267 IPR000644 -
Aip08g03341 572 PANTHER CBS/OCTICOSAPEPTIDE/PHOX/BEMP1 (PB1) DOMAIN PROTEIN 22 513 - -
Aip08g03341 572 ProSiteProfiles CBS domain profile. 284 341 IPR000644 -
Aip08g03341 572 MobiDBLite consensus disorder prediction 1 37 - -
Aip08g03341 572 PANTHER AMP-ACTIVATED PROTEIN KINASE, GAMMA REGULATORY SUBUNIT 22 513 - -
Aip08g03341 572 SMART PB1_new 383 468 IPR000270 GO:0005515
Aip08g03341 572 ProSiteProfiles CBS domain profile. 116 174 IPR000644 -
Aip08g03341 572 SUPERFAMILY CBS-domain pair 222 334 IPR046342 -
Aip08g03341 572 ProSiteProfiles CBS domain profile. 216 276 IPR000644 -
Aip08g03341 572 SUPERFAMILY CAD & PB1 domains 386 470 - -
Aip08g03341 572 ProSiteProfiles PB1 domain profile. 374 468 IPR000270 GO:0005515
Aip08g03341 572 SMART cbs_1 53 101 IPR000644 -
Aip08g03341 572 SMART cbs_1 287 332 IPR000644 -
Aip08g03341 572 SMART cbs_1 222 269 IPR000644 -
Aip08g03341 572 SMART cbs_1 119 163 IPR000644 -
Aip08g03341 572 ProSiteProfiles CBS domain profile. 50 107 IPR000644 -
Aip08g03341 572 SUPERFAMILY CBS-domain pair 45 159 IPR046342 -
Aip08g03341 572 Gene3D - 20 181 IPR046342 -
Aip08g03341 572 Gene3D - 212 339 IPR046342 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip08g03341 Aip-Chr8 124682425 124688422 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip08g03341 - - gmx:100785816 688.723
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip08g03341 08 124682425 124688422 Aip03g03258 03 106299673 106303922 PCT