Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g00488 ATGGTGCTGCAGAAGAGGTTAGACTATGGATTTAATGGCTACGAAGCACCAGCTGTTCCACGCGCTACCCGAACAACTAGAAGGAGAACCAAATTTCAAAGAAGAGTCCAAGATGATCAAATGTGCGCCATTGATTTATTGGCCACCCTAGCAGGTAAATTCTTTTTCCAAGATAAAGGGAATCCAACCATGCCTAGTGATGCATCAACAGATAAGGATCAGCATGGATTTGTTGAAGGGTGCCAAGATTCAGACAAACCTCTCAAAGATGAGCTTTTTTACAAACGAAGTTTTGACAACAACCACTTCCCTCACTTTTCTTCCCAAACAAACAAACAAAATTGTCCATTGAATGAACTCCAAAATCACGAAATTGATGTCCATTTAGGCAATGCTTCTGTAATAATAAGTTCCTGTAGCTCAGAAAGGCTAGTTTCTGAGAAATTAGTGGATGCCAGATGCCCTAACAAAATGGAAAATTTTACTAGCAAAGACATATTAGGTTCTTCTGGTCATCCAGTGGTTAATTGTTGTAAATTAGATGGTGAAAGTAAAACTAATAAACTAAAGGATAAGCTGCATAAGCTTGAGAAGGTTTCAATTGATCTTGGGACTAAGATGCGTGGTTTTGAGGATCCATCAACTGAAAAGCCTCCTAGACGGATCAGTTTAGGTAGCAAAGCCAAGTTGTCGAAGTATGTTGACATATTTTCCTATAGCTCATTGCCCAAAGGCTGTGACAATGTGTCAGCAGTTAGAAGAGATGATGACGAAAACTTTTCTGGGTCTACTCACCCTTGTACAAAAACGAAGTCCTTTATGCCAGTGACTGGTATACATGGTAGAAGACTAAGGAAATTATTGACTTGTAAATATGGCAAAGTTGCTCAGGAGTCGAAGAATGATACACTTGCTAGCAGTGATGAAACTTTGAAGTCAACTTACTCTAGTAAGAAGAACTACTATAAACGCCAAAGATCTCAGATGAATATTCCTTTCAAAAAGCGGAGGCGGTTTCATTGTAGCTCTGTTTCAAATTCCAGTGGATTTATAAGAAGTGCTGACATTTATTATTCACCTGAGAGTGACTGTGGAATACCAGTCTTGGAATCCCCACTAGGATGTAGAAGAGGTGATCCTGTGAATATTAGGATCAAGTCATTTACAGTCCCAGAGCTTTTTATTGAGATTCCAGAAACTGCTACCGTAGGATCCTTGAAGAGGACAGTTATGGATGCAGTAACTACTGTGCTTGGAGGTGGATTACACGTTGGTGTCGTACTTCAAGGAAAGAAAGTTAGAGATGACAGTAAAACTCTACTTCAAGCTGGAATATCCCATGATAACCAGTTGGATGCTTTGGGTTTCACATTGGAGCCTAATGTTTCACAAAGCCTACCACCTCTACATGCTTCAACATCACATTCTCTAATAAGGTATCCTTCCAATCCAGCTGTAACTCATCAGAGGACTCGAGGTATTTCTGACATGTTACTTGATCATCAAGTAACCAGTTTAGGTAACCATGTTGAAAGTGAGCATGATTCAGCACCTTCTCTAATCAACAAAGTTAAGGAGAAGAGTACCGTAGATTCTAAACAACTGGTTTCTTTTCCTGAAATGAGTAAGGATGAAAAAGTTATGATACCTGTGGTCCAGAAGTCAAAGCGATCTGAGATTTTGCAGCGGCGAATTCGTCGGCCTTTTTCAGTTGATGAAGTGGAAGCACTGATTCAAGCAGTTGAGAAACTGGGAACTGGAAGGTGGCGCGATGTTAAATGTCATGCTTTCGGTAACGTGGACCATCGGACATATGTGGATTTAAAGGTAAAACTGTTTGTGACTTCTTCTGCACCGCAACTACACTAG 1869 0.4024 MVLQKRLDYGFNGYEAPAVPRATRTTRRRTKFQRRVQDDQMCAIDLLATLAGKFFFQDKGNPTMPSDASTDKDQHGFVEGCQDSDKPLKDELFYKRSFDNNHFPHFSSQTNKQNCPLNELQNHEIDVHLGNASVIISSCSSERLVSEKLVDARCPNKMENFTSKDILGSSGHPVVNCCKLDGESKTNKLKDKLHKLEKVSIDLGTKMRGFEDPSTEKPPRRISLGSKAKLSKYVDIFSYSSLPKGCDNVSAVRRDDDENFSGSTHPCTKTKSFMPVTGIHGRRLRKLLTCKYGKVAQESKNDTLASSDETLKSTYSSKKNYYKRQRSQMNIPFKKRRRFHCSSVSNSSGFIRSADIYYSPESDCGIPVLESPLGCRRGDPVNIRIKSFTVPELFIEIPETATVGSLKRTVMDAVTTVLGGGLHVGVVLQGKKVRDDSKTLLQAGISHDNQLDALGFTLEPNVSQSLPPLHASTSHSLIRYPSNPAVTHQRTRGISDMLLDHQVTSLGNHVESEHDSAPSLINKVKEKSTVDSKQLVSFPEMSKDEKVMIPVVQKSKRSEILQRRIRRPFSVDEVEALIQAVEKLGTGRWRDVKCHAFGNVDHRTYVDLKVKLFVTSSAPQLH 622
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g00488 622 Gene3D - 554 616 - -
Aip03g00488 622 PANTHER TELOMERIC REPEAT BINDING PROTEIN 1 611 IPR031105 -
Aip03g00488 622 SUPERFAMILY Homeodomain-like 563 611 IPR009057 -
Aip03g00488 622 SUPERFAMILY Ubiquitin-like 378 466 IPR029071 -
Aip03g00488 622 CDD SANT_TRF 567 609 - -
Aip03g00488 622 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 561 620 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g00488 Aip-Chr3 4725171 4729840 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g00488 - - gmx:100797436 619.387
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip03g00488 03 4725171 4729840 Aip03g00488 03 4725171 4729840 ECH
Aip03g00488 03 4725171 4729840 Aip07g01002 07 12820347 12823629 ECH
Aip04g01831 04 80738976 80743313 Aip03g00488 03 4725171 4729840 ECH