Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy9g0966 ATGAGGCACTCTCATTATATCTTAGCATTTTTCTTCACTTTAATTCTTACAACTCAAGCAAGACACCATCACCATACAAAACATAAACACTCTTCACATTCTAATAATAATGACAATAATAGTAATAATCAATCATATCCTCCTTCTCCTTCTCCTTCTTCCGGAATTTCAGTGCCTCCTGTGGCTGCACCCGGTGGTCATGACAATGAAGCTCCTAGTCCTAGTCCCTCTGATGATGATGGCTCCGAAATCTTCGATGTTCGAACATTTGGGGCCATTGGAGATGGTATAGCTGATGATACAAATTCCTTCAAGATGGCGTGGGACAGTGCTTGCCAAAGTGAATCAGCAATTAACGTTGTACTTGTTCCTCGCGGTTTCTCGTTCATGGTCCAGTCTACAATCTTCACTGGTCCCTGTCAAGGTGGCTTAGTGTTAAAGGTTGATGGCACTCTCATGCCACCAGATGGACCTGAATCTTGGCCAAACAACACAAGTAGGCGTCAATGGCTTGTCTTTTACAGAATCAATAATATGTCACTACAAGGAAGTGGTGTTATTGATGGCAGAGGACAAAATTGGTGGGACCTTCCTTGTAAGCCTCATAAGGCATTAAGGTTTTTCATGAGTTCAAACTTGAGTGTGCAAGGACTTAGAATCAAGAACAGTCCCCAGTTCCATTTCAGATTTGATGGCTGCAAAAGCGTTCGAGTAGATTCAATCTTCATAACATCTCCAGCACTAAGTCCCAACACCGATGGAATACACATAGAAAACACAAATGACGTAAGGATATACAATTCCGTCATTTCCAACGGTGATGACTGTGTGTCCATTGGAACGGGTTGCTATGATGTTGATATAAAGAACATTACATGTGGTCCCAGCCACGGAATTAGCATTGGTAGTTTGGGAAACCACAACTCAAGAGCCTGTGTGTCAAACATTACAGTAAGAGAGTCAACGATCAAAGGGTCAGACAATGGAGTTAGAATAAAAACATGGCAAGGAGGATCAGGATCAGTATCAAAAGTAACATTCAGCAAGATTCACATGGAGAGTGTACGGAACCCAATAATAATCGACCAATTCTATTGCCTATCGAAAGATTGCAGCAACAAAAGCTCGGCAGTATTTGTATCAGACATAGTATACTCAAACATAAAGGGGACATATGATATAAGGCACCCACCCATGCGTTTCGCTTGCAGTGACTCTGTGCCTTGCACTAACTTGACTCTTTCTGATATTGAGCTTCTTCCTGCACAGGGTGATCTTTTTAATGACCCTTTTTGTTGGAATGCTTATGGCAATTCGGAGACACTAACTATTCCTCCTGTTTCTTGCTTGATTGAGGGTCTTCCTCAGTCTCTTCCGGGGAATGATTTATCTCGTTGCTGA 1401 0.4204 MRHSHYILAFFFTLILTTQARHHHHTKHKHSSHSNNNDNNSNNQSYPPSPSPSSGISVPPVAAPGGHDNEAPSPSPSDDDGSEIFDVRTFGAIGDGIADDTNSFKMAWDSACQSESAINVVLVPRGFSFMVQSTIFTGPCQGGLVLKVDGTLMPPDGPESWPNNTSRRQWLVFYRINNMSLQGSGVIDGRGQNWWDLPCKPHKALRFFMSSNLSVQGLRIKNSPQFHFRFDGCKSVRVDSIFITSPALSPNTDGIHIENTNDVRIYNSVISNGDDCVSIGTGCYDVDIKNITCGPSHGISIGSLGNHNSRACVSNITVRESTIKGSDNGVRIKTWQGGSGSVSKVTFSKIHMESVRNPIIIDQFYCLSKDCSNKSSAVFVSDIVYSNIKGTYDIRHPPMRFACSDSVPCTNLTLSDIELLPAQGDLFNDPFCWNAYGNSETLTIPPVSCLIEGLPQSLPGNDLSRC* 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy9g0966 466 ProSitePatterns Polygalacturonase active site. 290 303 IPR000743 GO:0004650|GO:0005975
Ahy9g0966 466 MobiDBLite consensus disorder prediction 23 84 - -
Ahy9g0966 466 Pfam Glycosyl hydrolases family 28 116 419 IPR000743 GO:0004650|GO:0005975
Ahy9g0966 466 PANTHER POLYGALACTURONASE/GLYCOSIDE HYDROLASE FAMILY PROTEIN 9 456 - -
Ahy9g0966 466 PANTHER - 9 456 - -
Ahy9g0966 466 MobiDBLite consensus disorder prediction 35 51 - -
Ahy9g0966 466 SMART pbh1 210 259 IPR006626 -
Ahy9g0966 466 SMART pbh1 260 281 IPR006626 -
Ahy9g0966 466 SMART pbh1 313 334 IPR006626 -
Ahy9g0966 466 SMART pbh1 283 303 IPR006626 -
Ahy9g0966 466 SMART pbh1 342 363 IPR006626 -
Ahy9g0966 466 Gene3D - 69 451 IPR012334 -
Ahy9g0966 466 SUPERFAMILY Pectin lyase-like 83 452 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy9g0966 Ahy-Chr9 18785872 18790549 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy9g0966 79 466 Glycoside Hydrolase AT1G02460 69.212 0.0 592
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy9g0966 - - gmx:100792285 716.842
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy19g1234 19 24145466 24150391 Ahy9g0966 9 18785872 18790549 hybridization
Ahy16g0754 16 13737956 13741167 Ahy9g0966 9 18785872 18790549 PCT
Ahy6g0585 6 7129260 7132355 Ahy9g0966 9 18785872 18790549 PCT
Ahy9g0966 9 18785872 18790549 Ahy16g0754 16 13737956 13741167 PCT
Ahy9g0966 9 18785872 18790549 Ahy6g0585 6 7129260 7132355 PCT